Browse Element(s) Details


OsAffx.18700.1.S1_at

Description tigr:9639.m00525
TID=OsAffx.18700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0600011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05950Os.55743.1.S1_at11/1111+2803518..2804262expressed protein
LOC_Os11g05960OsAffx.18698.1.S1_at11/1111+2805561..2805887hypothetical protein
LOC_Os11g05970OsAffx.18699.1.S1_at11/1111+2806826..2808073pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein
LOC_Os11g06020Os.11805.1.A1_s_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06020OsAffx.30836.1.S1_x_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06030OsAffx.7010.1.S1_at10/1111+2839740..2841509hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18700.1.S1_at--558--4111Chr11:2826833..2826857 (25 bp)
CGAAGCGCCCCGTCGGGCAGATGAC
LOC_Os11g06000
OsAffx.18700.1.S1_at--732--1031Chr11:2826800..2826824 (25 bp)
AGGTCGGAAGCGTTGGCCTCATTGT
LOC_Os11g06000
OsAffx.18700.1.S1_at--698--5411Chr11:2826794..2826818 (25 bp)
GAAGCGTTGGCCTCATTGTTGACGT
LOC_Os11g06000
OsAffx.18700.1.S1_at--666--4031Chr11:2826790..2826814 (25 bp)
CGTTGGCCTCATTGTTGACGTGATC
LOC_Os11g06000
OsAffx.18700.1.S1_at--1099--8411Chr11:2826751..2826775 (25 bp)
GGCCGAGGCGCAGCATAACATAGTG
LOC_Os11g06000
OsAffx.18700.1.S1_at--859--891Chr11:2826746..2826770 (25 bp)
AGGCGCAGCATAACATAGTGGCCAT
LOC_Os11g06000
OsAffx.18700.1.S1_at--974--5831Chr11:2826514..2826538 (25 bp)
GACCTCGCCAGGGACAGCATTGCGC
LOC_Os11g06000
OsAffx.18700.1.S1_at--218--3411Chr11:2826500..2826524 (25 bp)
CAGCATTGCGCTGTTGTCGAGGATA
LOC_Os11g06000
OsAffx.18700.1.S1_at--108--4571Chr11:2826493..2826517 (25 bp)
GCGCTGTTGTCGAGGATAGCCAAGA
LOC_Os11g06000
OsAffx.18700.1.S1_at--536--7951Chr11:2826480..2826504 (25 bp)
GGATAGCCAAGAAGCCATCGAGCAT
LOC_Os11g06000
OsAffx.18700.1.S1_at--1048--5411Chr11:2826470..2826494 (25 bp)
GAAGCCATCGAGCATCATGGCCGTC
LOC_Os11g06000
Target Sequence 
CGAAGCGCCCCGTCGGGCAGATGACCATCGTGGAGGTCGGAAGCGTTGGCCTCATTGTTGACGTGATCAACGTCGTTGCC
AAGGCCGAGGCGCAGCATAACATAGTGGCCATCCTCTTCTACCTCTCATCGAACAACCCGGACGCATCCCGAAGCACGAC
CAACCAGGGCAGGGCCATCGCCGCGGGCACCGTGTCAGCCCTCGCCGCCTTGCTCTCCACCGACCGCGACGACCTCGCCA
GGGACAGCATTGCGCTGTTGTCGAGGATAGCCAAGAAGCCATCGAGCATCATGGCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis