Browse Element(s) Details


OsAffx.7010.1.S1_at

Description tigr:9639.m00529
TID=OsAffx.7010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0603010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein
LOC_Os11g06020Os.11805.1.A1_s_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06020OsAffx.30836.1.S1_x_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06030OsAffx.7010.1.S1_at10/1111+2839740..2841509hypothetical protein
LOC_Os11g06040Os.35800.1.S1_s_at11/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06040Os.35800.1.S1_at8/1111+2856728..2864854phox domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7010.1.S1_at--523--5191Chr11:2840103..2840127 (25 bp)
GAATTGCTGAAGCTAATTAATCAGC
LOC_Os11g06030
OsAffx.7010.1.S1_at--1150--10491Chr11:2840119..2840143 (25 bp)
TTAATCAGCAATTTCTCTCTCACAC
LOC_Os11g06030
OsAffx.7010.1.S1_at--956--391Chr11:2840122..2840146 (25 bp)
ATCAGCAATTTCTCTCTCACACATG
LOC_Os11g06030
OsAffx.7010.1.S1_at--138--1492Chr11:2840125..2840149 (25 bp)
AGCAATTTCTCTCTCACACATGCAC
LOC_Os11g06030
OsAffx.7010.1.S1_at--387--3131Chr11:2840128..2840152 (25 bp)
AATTTCTCTCTCACACATGCACACT
LOC_Os11g06030
OsAffx.7010.1.S1_at--622--2091Chr11:2840142..2840166 (25 bp)
ACATGCACACTCTCTCAAAGAACCA
LOC_Os11g06030
OsAffx.7010.1.S1_at--33--5131Chr11:2840146..2840170 (25 bp)
GCACACTCTCTCAAAGAACCAGAAG
LOC_Os11g06030
OsAffx.7010.1.S1_at--362--5051Chr11:2840172..2840196 (25 bp)
GCAGAATTGAAGAAGATCCTAGAAT
LOC_Os11g06030
OsAffx.7010.1.S1_at--148--951Chr11:2840308..2840332 (25 bp)
AGGAAGAGAGTGATGTAAGACAACA
LOC_Os11g06030
OsAffx.7010.1.S1_at--200--231Chr11:2840336..2840360 (25 bp)
ATATACCAAGGTATCATGCAAGGGA
LOC_Os11g06030
OsAffx.7010.1.S1_at--648--4371NONE
CCAAGGTATCATGCAAGGGAGGTTG
NONE
Target Sequence 
GAATTGCTGAAGCTAATTAATCAGCAATTTCTCTCTCACACATGCACACTCTCTCAAAGAACCAGAAGAGCAGAATTGAA
GAAGATCCTAGAATTAAGAAAGAAGAAGGCGAAGGCGAAGGTGAAGAAGAAGCCGAAGAAGAAGAAGAACAAGAAGGCAA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAAGAGAGTGATGTAAGACAACAAAAATATACC
AAGGTATCATGCAAGGGAGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis