Browse Element(s) Details


Os.35800.1.S1_at

Description gb:AK065738.1
DB_XREF= gi:32975756
TID=Os.35800.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013040H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013040H05, full insert sequence.
FL= gb:AK065738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g060408/11phox domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein
LOC_Os11g06020Os.11805.1.A1_s_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06020OsAffx.30836.1.S1_x_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06030OsAffx.7010.1.S1_at10/1111+2839740..2841509hypothetical protein
LOC_Os11g06040Os.35800.1.S1_s_at11/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06040Os.35800.1.S1_at8/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06050OsAffx.7012.1.S1_at11/1111+2868808..2871684hypothetical protein
LOC_Os11g06059NANA11+2872261..2872888NA

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35800.1.S1_at--995--271Chr11:2856797..2856821 (25 bp)
ATAGGCGTACCGTATATCTGACTGT
LOC_Os11g06040
Os.35800.1.S1_at--786--8311Chr11:2856794..2856818 (25 bp)
GGCGTACCGTATATCTGACTGTCCA
LOC_Os11g06040
Os.35800.1.S1_at--1118--6971Chr11:2856791..2856815 (25 bp)
GTACCGTATATCTGACTGTCCATTC
LOC_Os11g06040
Os.35800.1.S1_at--439--6891Chr11:2856786..2856810 (25 bp)
GTATATCTGACTGTCCATTCTTCAG
LOC_Os11g06040
Os.35800.1.S1_at--1085--471Chr11:2856782..2856806 (25 bp)
ATCTGACTGTCCATTCTTCAGTTGA
LOC_Os11g06040
Os.35800.1.S1_at--404--8951Chr11:2856779..2856803 (25 bp)
TGACTGTCCATTCTTCAGTTGAAGA
LOC_Os11g06040
Os.35800.1.S1_at--779--5371Chr11:2856760..2856783 (24 bp)
GAAGAACTCAATCCATGCATCTTGG
LOC_Os11g06040
Os.35800.1.S1_at--293--5471NONE
GAACTCAATCCATGCATCTTGGCAA
NONE
Os.35800.1.S1_at--79--9731NONE
TCAATCCATGCATCTTGGCAAGATA
NONE
Os.35800.1.S1_at--510--8231NONE
GGCAAGATAGCAATCAAGAACCTTT
NONE
Os.35800.1.S1_at--416--6491Chr11:2856731..2856755 (25 bp)
GATAGCAATCAAGAACCTTTGACTG
LOC_Os11g06040
Target Sequence 
ATAGGCGTACCGTATATCTGACTGTCCATTCTTCAGTTGAAGAACTCAATCCATGCATCTTGGCAAGATAGCAATCAAGA
ACCTTTGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis