Browse Element(s) Details


Os.27753.1.S1_at

Description gb:AK102797.1
DB_XREF= gi:32988006
TID=Os.27753.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.27753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108D09, full insert sequence.
FL= gb:AK102797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0599011/11digalactosyldiacylglycerol synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05930Os.12795.1.S1_at11/1111+2784900..2789632CCT motif family protein, expressed
LOC_Os11g05940OsAffx.7008.1.S1_at10/1111+2794876..2798125hypothetical protein
LOC_Os11g05950Os.55743.1.S1_at11/1111+2803518..2804262expressed protein
LOC_Os11g05960OsAffx.18698.1.S1_at11/1111+2805561..2805887hypothetical protein
LOC_Os11g05970OsAffx.18699.1.S1_at11/1111+2806826..2808073pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein
LOC_Os11g06020Os.11805.1.A1_s_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06020OsAffx.30836.1.S1_x_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06030OsAffx.7010.1.S1_at10/1111+2839740..2841509hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0019375biological_processgalactolipid biosynthesis
GO:0042550biological_processphotosystem I stabilization
GO:0005739cellular_componentmitochondrion
GO:0009707cellular_componentchloroplast outer membrane
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035250molecular_functionUDP-galactosyltransferase activity
GO:0046480molecular_functiongalactolipid galactosyltransferase activity
GO:0046481molecular_functionUDP-galactose:MGDG galactosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27753.1.S1_at--865--9851Chr11:2817710..2817734 (25 bp)
TACAACTTATCCTGGGAGGCCGCAA
LOC_Os11g05990
Os.27753.1.S1_at--231--8551Chr11:2817747..2817771 (25 bp)
TGGAGCACTCCGAGCTGGACAAGGT
LOC_Os11g05990
Os.27753.1.S1_at--227--8151Chr11:2817763..2817787 (25 bp)
GGACAAGGTCTTGAGCAGCAGCAAC
LOC_Os11g05990
Os.27753.1.S1_at--293--3331Chr11:2817902..2817926 (25 bp)
CACTACTGCTTCACTGGCAATGAGC
LOC_Os11g05990
Os.27753.1.S1_at--246--8231Chr11:2817917..2817941 (25 bp)
GGCAATGAGCTCCTCAGACTGTCAA
LOC_Os11g05990
Os.27753.1.S1_at--712--9651Chr11:2817930..2817954 (25 bp)
TCAGACTGTCAACCGGAGCAATACC
LOC_Os11g05990
Os.27753.1.S1_at--835--8231Chr11:2817956..2817980 (25 bp)
GGCACCCTCAATTACAACAAGCAAC
LOC_Os11g05990
Os.27753.1.S1_at--29--6951Chr11:2818061..2818085 (25 bp)
GTAGTAGTATTTCTCTCAGCACATA
LOC_Os11g05990
Os.27753.1.S1_at--130--10331Chr11:2818124..2818148 (25 bp)
TTTCTTTTTGTCTACCATATGCCGA
LOC_Os11g05990
Os.27753.1.S1_at--261--10131Chr11:2818141..2818165 (25 bp)
TATGCCGAAGGCAATCTTGTTCATT
LOC_Os11g05990
Os.27753.1.S1_at--29--1471Chr11:2818216..2818240 (25 bp)
AGAAGTGCCATTTTCACTGGCCTTC
LOC_Os11g05990
Target Sequence 
TACAACTTATCCTGGGAGGCCGCAACACAGAGATTCATGGAGCACTCCGAGCTGGACAAGGTCTTGAGCAGCAGCAACAG
GGACTGCACCACCAGCACCAGTGGATGTGGTAAAAGTGGAGACAATAAGATGGAAAAATCAGCCTCGNTGCCGAACATGT
CAGACATGGTAGATGGTGGGCTGGCCTTCGCCCACTACTGCTTCACTGGCAATGAGCTCCTCAGACTGTCAACCGGAGCA
ATACCCGGCACCCTCAATTACAACAAGCAACATAGCTTGGACCTCCACCTCTTGCCGCCTCAGGTACAGAACCCAGTATA
CGGCTGGTAAGATACTCCATATATACAATTAGTAGTAGTATTTCTCTCAGCACATAGATAGCTCTGTAATTTGTTTGTAA
CACTAGTTTTCGTTTTTCTTTTTGTCTACCATATGCCGAAGGCAATCTTGTTCATTATTATTGCAAACTACTACTACAGT
ACTACTACAAACTACATGTGTTAGATAGAAGTGCCATTTTCACTGGCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis