Browse Element(s) Details


OsAffx.7008.1.S1_at

Description tigr:9639.m00518
TID=OsAffx.7008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0594010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05900NANA11+2770311..2772910transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05910Os.47463.1.S1_x_at6/1111+2773017..2774011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05910Os.14491.2.S1_x_at5/1111+2773017..2774011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.3.S1_s_at10/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.4.S1_s_at9/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.32056.1.S1_x_at8/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.1.S1_s_at5/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.32056.1.S1_at3/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05930Os.12795.1.S1_at11/1111+2784900..2789632CCT motif family protein, expressed
LOC_Os11g05940OsAffx.7008.1.S1_at10/1111+2794876..2798125hypothetical protein
LOC_Os11g05950Os.55743.1.S1_at11/1111+2803518..2804262expressed protein
LOC_Os11g05960OsAffx.18698.1.S1_at11/1111+2805561..2805887hypothetical protein
LOC_Os11g05970OsAffx.18699.1.S1_at11/1111+2806826..2808073pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7008.1.S1_at--241--7611Chr11:2797843..2797867 (25 bp)
GGGCACTGGTTCTACGTGCCACCGT
LOC_Os11g05940
OsAffx.7008.1.S1_at--510--9431NONE
TCGGGACAGTATGGCGGCGCTATCA
NONE
OsAffx.7008.1.S1_at--721--8351Chr11:2796239..2796263 (25 bp)
GGCGGCGCTATCATGATCAATTCTG
LOC_Os11g05940
OsAffx.7008.1.S1_at--304--411Chr11:2796230..2796254 (25 bp)
ATCATGATCAATTCTGCGGCGGTGA
LOC_Os11g05940
OsAffx.7008.1.S1_at--696--8791Chr11:2796160..2796184 (25 bp)
TGTTCATACCGGAGCGGCCTCGCAT
LOC_Os11g05940
OsAffx.7008.1.S1_at--811--7771Chr11:2796108..2796132 (25 bp)
GGTCCCCTTGGTGCCCGATAGAGGT
LOC_Os11g05940
OsAffx.7008.1.S1_at--1131--3471Chr11:2795116..2795140 (25 bp)
CAGGAAGCCTGAACTGAAGACTGCA
LOC_Os11g05940
OsAffx.7008.1.S1_at--502--6471Chr11:2795071..2795095 (25 bp)
GATACAAATGAGCTATGCTGCTGCT
LOC_Os11g05940
OsAffx.7008.1.S1_at--775--3831Chr11:2795054..2795078 (25 bp)
CTGCTGCTGTGAAGACTGCAGGTCC
LOC_Os11g05940
OsAffx.7008.1.S1_at--930--5011Chr11:2795037..2795061 (25 bp)
GCAGGTCCAAGCCATGAAGCTGTGA
LOC_Os11g05940
OsAffx.7008.1.S1_at--24--2891Chr11:2794995..2795019 (25 bp)
AAGGGACACAAGTTTTCACGGCAGA
LOC_Os11g05940
Target Sequence 
GGGCACTGGTTCTACGTGCCACCGTCGGGACAGTATGGCGGCGCTATCATGATCAATTCTGCGGCGGTGACTGGTGACGC
CACCGGCATCACCGGTACTGGCATTGGCACCGGCGTGTTCATACCGGAGCGGCCTCGCATCCGCAGGATGAAGCATCCAA
TCAATTGGGTCCCCTTGGTGCCCGATAGAGGTGGCAATGGCAGGAAGCCTGAACTGAAGACTGCAAATGCAAGCAAGGGC
AAAGGGATACAAATGAGCTATGCTGCTGCTGTGAAGACTGCAGGTCCAAGCCATGAAGCTGTGAGGGCAAATCAAAGCAA
GAAGGGACACAAGTTTTCACGGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis