Browse Element(s) Details


OsAffx.18699.1.S1_at

Description tigr:9639.m00521
TID=OsAffx.18699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0597011/11pyridine nucleotide-disulphide oxidoreductase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05930Os.12795.1.S1_at11/1111+2784900..2789632CCT motif family protein, expressed
LOC_Os11g05940OsAffx.7008.1.S1_at10/1111+2794876..2798125hypothetical protein
LOC_Os11g05950Os.55743.1.S1_at11/1111+2803518..2804262expressed protein
LOC_Os11g05960OsAffx.18698.1.S1_at11/1111+2805561..2805887hypothetical protein
LOC_Os11g05970OsAffx.18699.1.S1_at11/1111+2806826..2808073pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18699.1.S1_at--367--8411Chr11:2807537..2807561 (25 bp)
GGCGCCAACACGGACGACAAGGTGT
LOC_Os11g05970
OsAffx.18699.1.S1_at--1134--4091Chr11:2807593..2807617 (25 bp)
CGACTGCCACTTCGTGTGCACGGGT
LOC_Os11g05970
OsAffx.18699.1.S1_at--448--4671Chr11:2807641..2807665 (25 bp)
GCGGGAGTCGTTCCTCGGCGAGCAC
LOC_Os11g05970
OsAffx.18699.1.S1_at--741--4431Chr11:2807732..2807756 (25 bp)
GCCATCGGCGACATCACGGACGTGC
LOC_Os11g05970
OsAffx.18699.1.S1_at--885--5091Chr11:2807788..2807812 (25 bp)
GCACGCCATGGTGGTGTCGCGCAAC
LOC_Os11g05970
OsAffx.18699.1.S1_at--573--8711Chr11:2807802..2807826 (25 bp)
TGTCGCGCAACCTGCGGCTGCTGGT
LOC_Os11g05970
OsAffx.18699.1.S1_at--1091--951Chr11:2807862..2807886 (25 bp)
AGGAGCGGAAGCTGCACCGGTACAA
LOC_Os11g05970
OsAffx.18699.1.S1_at--871--4751Chr11:2807872..2807896 (25 bp)
GCTGCACCGGTACAAGGCGTCCAAG
LOC_Os11g05970
OsAffx.18699.1.S1_at--21--4271Chr11:2807973..2807997 (25 bp)
CCGGCGTGATCAAGCCCCGGGATTA
LOC_Os11g05970
OsAffx.18699.1.S1_at--172--371Chr11:2807981..2808005 (25 bp)
ATCAAGCCCCGGGATTACTTCATCG
LOC_Os11g05970
OsAffx.18699.1.S1_at--990--3651Chr11:2807998..2808022 (25 bp)
CTTCATCGCGCGGACGCGAAGGATG
LOC_Os11g05970
Target Sequence 
GGCGCCAACACGGACGACAAGGTGTTCACGACGTCCGCCGGCGAGACGGTCGCCGCCGACTGCCACTTCGTGTGCACGGG
TCGCCCCGTGGCGTCCGGGTGGCTGCGGGAGTCGTTCCTCGGCGAGCACGTCGGCGGGGACGGGAAGGTGGCGGTGGACG
AGCACCTGCGGGTGGGCGGGCTGAGGAACGTGTTCGCCATCGGCGACATCACGGACGTGCCGGAGGCGAAGCAGGGGTAC
CTGGCGCAGCGGCACGCCATGGTGGTGTCGCGCAACCTGCGGCTGCTGGTGAAGGCCGGCGGCGGCGACGGCGGCGGCAG
CAGCAAGGAGCGGAAGCTGCACCGGTACAAGGCGTCCAAGGCGGCCATCACCGTCACGCTCGGCCGCCGCGACGCGCTCG
CCGAGCTGCCGTTCATGACGGTGATCGGCCACCTCCCCGGCGTGATCAAGCCCCGGGATTACTTCATCGCGCGGACGCGA
AGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis