Browse Element(s) Details


OsAffx.25526.1.S1_at

Description tigr:9631.m04239
TID=OsAffx.25526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4392011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43890Os.37345.1.S1_s_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43890Os.37345.1.S1_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43900OsAffx.3506.1.S1_at11/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_x_at10/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_at8/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.27446.3.S1_x_at1/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43910Os.22835.1.S1_at10/113+24592377..24595650expressed protein
LOC_Os03g43910Os.57436.1.S1_x_at4/113+24592377..24595650expressed protein
LOC_Os03g43910Os.53017.1.S1_at1/113+24592377..24595650expressed protein
LOC_Os03g43920OsAffx.25526.1.S1_at11/113+24597465..24598804hypothetical protein
LOC_Os03g43930Os.14126.1.S1_at11/113+24606047..24611849class III HD-Zip protein 4, putative, expressed
LOC_Os03g43940OsAffx.25527.1.S1_at11/113+24613422..24613730hypothetical protein
LOC_Os03g43944NANA3+24616684..24616906NA
LOC_Os03g43950OsAffx.13335.1.S1_at11/113+24618993..24619316hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25526.1.S1_at--751--3311Chr03:24598146..24598170 (25 bp)
CACATCTGCTTCTCAAAGTGGATAT
LOC_Os03g43920
OsAffx.25526.1.S1_at--1063--871Chr03:24598176..24598524 (25 bp)
AGGCCTTTGACACGGATCTCGAGTT
LOC_Os03g43920
OsAffx.25526.1.S1_at--266--6071Chr03:24598520..24598544 (25 bp)
GAGTTCGTCCAAGGCATCATCTTTG
LOC_Os03g43920
OsAffx.25526.1.S1_at--1084--3531Chr03:24598537..24598561 (25 bp)
CATCTTTGTCTTTGGTTCAACCTTC
LOC_Os03g43920
OsAffx.25526.1.S1_at--33--9331Chr03:24598560..24598584 (25 bp)
TCGCGCTACACACCAATTTTGCCAA
LOC_Os03g43920
OsAffx.25526.1.S1_at--85--2291Chr03:24598583..24598607 (25 bp)
AAATGTTCGATAACCCCGATCTGTC
LOC_Os03g43920
OsAffx.25526.1.S1_at--919--4031Chr03:24598599..24598623 (25 bp)
CGATCTGTCGTTCGGCCGAGGACAT
LOC_Os03g43920
OsAffx.25526.1.S1_at--957--1231Chr03:24598626..24598650 (25 bp)
AGTTGGTTCAGAGCTATTTCCCTGC
LOC_Os03g43920
OsAffx.25526.1.S1_at--167--10211Chr03:24598640..24598664 (25 bp)
TATTTCCCTGCTCTATCTTTGACTT
LOC_Os03g43920
OsAffx.25526.1.S1_at--4--7811Chr03:24598695..24598719 (25 bp)
GGTCTGCAAGCTACCGAAAGCGGCC
LOC_Os03g43920
OsAffx.25526.1.S1_at--715--631Chr03:24598720..24598744 (25 bp)
ATGCAACCCCTCATTGACAAGGTCT
LOC_Os03g43920
Target Sequence 
CACATCTGCTTCTCAAAGTGGATATTACGAAGGCCTTTGACACGGATCTCGAGTTCGTCCAAGGCATCATCTTTGTCTTT
GGTTCAACCTTCGCGCTACACACCAATTTTGCCAAATGTTCGATAACCCCGATCTGTCGTTCGGCCGAGGACATGGAGTT
GGTTCAGAGCTATTTCCCTGCTCTATCTTTGACTTTCCTTTCACCTACCTCTGCATCCCGCTATCGGTCTGCAAGCTACC
GAAAGCGGCCATGCAACCCCTCATTGACAAGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis