Browse Element(s) Details


OsAffx.25527.1.S1_at

Description tigr:9631.m04241
TID=OsAffx.25527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4394011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43900OsAffx.3506.1.S1_at11/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_x_at10/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_at8/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.27446.3.S1_x_at1/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43910Os.22835.1.S1_at10/113+24592377..24595650expressed protein
LOC_Os03g43910Os.57436.1.S1_x_at4/113+24592377..24595650expressed protein
LOC_Os03g43910Os.53017.1.S1_at1/113+24592377..24595650expressed protein
LOC_Os03g43920OsAffx.25526.1.S1_at11/113+24597465..24598804hypothetical protein
LOC_Os03g43930Os.14126.1.S1_at11/113+24606047..24611849class III HD-Zip protein 4, putative, expressed
LOC_Os03g43940OsAffx.25527.1.S1_at11/113+24613422..24613730hypothetical protein
LOC_Os03g43944NANA3+24616684..24616906NA
LOC_Os03g43950OsAffx.13335.1.S1_at11/113+24618993..24619316hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25527.1.S1_at--542--7891Chr03:24613453..24613477 (25 bp)
GGTTCGCCACCGTGCTAGATGTGGA
LOC_Os03g43940
OsAffx.25527.1.S1_at--297--3371Chr03:24613460..24613484 (25 bp)
CACCGTGCTAGATGTGGACATGGTA
LOC_Os03g43940
OsAffx.25527.1.S1_at--1107--10011Chr03:24613483..24613507 (25 bp)
TAGAGAAGGTGAGGTCATCGCTGCT
LOC_Os03g43940
OsAffx.25527.1.S1_at--394--9791Chr03:24613525..24613549 (25 bp)
TAAGAGGCGGTCAAGCCTCGATGTT
LOC_Os03g43940
OsAffx.25527.1.S1_at--1116--2431Chr03:24613554..24613578 (25 bp)
AAAAGGGCGTGCTTTTGCTCTAACT
LOC_Os03g43940
OsAffx.25527.1.S1_at--965--9071Chr03:24613563..24613587 (25 bp)
TGCTTTTGCTCTAACTCTGCTAGGA
LOC_Os03g43940
OsAffx.25527.1.S1_at--124--2551Chr03:24613575..24613599 (25 bp)
AACTCTGCTAGGAGCGACTCTGAGA
LOC_Os03g43940
OsAffx.25527.1.S1_at--877--4491Chr03:24613620..24613644 (25 bp)
GCCGTGGATGGCTTTACTGCAGAAA
LOC_Os03g43940
OsAffx.25527.1.S1_at--723--7851Chr03:24613629..24613653 (25 bp)
GGCTTTACTGCAGAAAGGGAGACAT
LOC_Os03g43940
OsAffx.25527.1.S1_at--66--5991Chr03:24613647..24613671 (25 bp)
GAGACATGCGGCAAGGCGTCTTTTG
LOC_Os03g43940
OsAffx.25527.1.S1_at--1134--8211Chr03:24613656..24613680 (25 bp)
GGCAAGGCGTCTTTTGCCATGTGCC
LOC_Os03g43940
Target Sequence 
GGTTCGCCACCGTGCTAGATGTGGACATGGTAGAGAAGGTGAGGTCATCGCTGCTCAGGGTTTTGGGGCTGCTAAGAGGC
GGTCAAGCCTCGATGTTGGGGAAAAGGGCGTGCTTTTGCTCTAACTCTGCTAGGAGCGACTCTGAGATTGCGGCGATGGA
AGCTAAGGCCGTGGATGGCTTTACTGCAGAAAGGGAGACATGCGGCAAGGCGTCTTTTGCCATGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis