Browse Element(s) Details


Os.4930.1.S1_at

Description gb:AK121216.1
DB_XREF= gi:37990839
TID=Os.4930.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090A04, full insert sequence.
FL= gb:AK121216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1633011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16280NANA8+9930028..9934458retrotransposon protein, putative, unclassified
LOC_Os08g16290Os.10731.2.A1_at1/118+9936834..9940761retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16290Os.45173.1.S1_x_at1/118+9936834..9940761retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16300OsAffx.17023.1.S1_at11/118+9947192..9948950hypothetical protein
LOC_Os08g16300Os.53644.1.S1_at1/118+9947192..9948950hypothetical protein
LOC_Os08g16310Os.9691.1.S1_at2/118+9949447..9950942hypothetical protein
LOC_Os08g16320OsAffx.5840.1.S1_x_at1/118+9952630..9954132Cytochrome P450 family protein
LOC_Os08g16330Os.4930.1.S1_at11/118+9958642..9959397expressed protein
LOC_Os08g16340OsAffx.23366.1.S1_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16340OsAffx.23366.2.S1_s_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16350Os.17702.2.S1_x_at11/118+9970633..9973632expressed protein
LOC_Os08g16350Os.17702.1.S1_at10/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.1.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.2.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16360NANA8+9978264..9978593expressed protein
LOC_Os08g16370NANA8+9979651..9984243transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4930.1.S1_at--726--9151Chr08:9958687..9958711 (25 bp)
TGCCCTGCAGAAGCCGGTCGGAGAT
LOC_Os08g16330
Os.4930.1.S1_at--281--1451Chr08:9958745..9958769 (25 bp)
AGAAGATCGATCGTCAGTGGGAATC
LOC_Os08g16330
Os.4930.1.S1_at--279--5791Chr08:9958902..9958926 (25 bp)
GACGACGGCACGACGCGATATGGCA
LOC_Os08g16330
Os.4930.1.S1_at--257--611Chr08:9959134..9959158 (25 bp)
ATGCGCATGCGCTCCAGAAATATGG
LOC_Os08g16330
Os.4930.1.S1_at--103--10371Chr08:9959174..9959198 (25 bp)
TTTTTATGAGCAAAGTCCTCCTCCC
LOC_Os08g16330
Os.4930.1.S1_at--324--4291Chr08:9959190..9959214 (25 bp)
CCTCCTCCCATGAATAACGTCGTAA
LOC_Os08g16330
Os.4930.1.S1_at--1142--6731Chr08:9959218..9959242 (25 bp)
GTTCATTCTATTTCGTTGAGAGGCA
LOC_Os08g16330
Os.4930.1.S1_at--711--131Chr08:9959245..9959269 (25 bp)
ATTAATTATGTTCTGCTGGCTGCGC
LOC_Os08g16330
Os.4930.1.S1_at--126--8491Chr08:9959261..9959285 (25 bp)
TGGCTGCGCAGTACCTAGCTGTGAT
LOC_Os08g16330
Os.4930.1.S1_at--430--3352Chr08:9959287..9959311 (25 bp)
CACCCGGCACGGTAGAAAAGCTTGT
LOC_Os08g16330
Os.4930.1.S1_at--30--2351Chr08:9959303..9959327 (25 bp)
AAAGCTTGTGCCGATATGCCAGGAA
LOC_Os08g16330
Target Sequence 
TGCCCTGCAGAAGCCGGTCGGAGATGGCAGAAGATCGTCAGCGGAGACGCTGACGGGCAGAAGATCGATCGTCAGTGGGA
ATCGGCGGCGGAAGCGGGCAGAAGATCGTTATTGGGCGACATTGGAGGAGACGACCGAAGATCGTCAGCGGGGAGTGCTC
GATCTTGAGCAGAAACCGATGGTGGGAGACGACAGAAGATTGATCAGTAGCTGACGACGACGGCACGACGCGATATGGCA
GAAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCT
CCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGT
ACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis