Browse Element(s) Details


OsAffx.3081.1.S1_at

Description tigr:9630.m05535
TID=OsAffx.3081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5580010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55770Os.28065.1.S1_x_at11/112+34138133..34140940expressed protein
LOC_Os02g55770Os.28065.2.S1_at9/112+34138133..34140940expressed protein
LOC_Os02g55780Os.7287.1.S1_s_at10/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55780Os.7287.1.S1_x_at6/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55790Os.26004.2.S1_at11/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.1.S1_x_at4/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.3.S1_x_at3/112+34152482..34155627hypothetical protein
LOC_Os02g55800OsAffx.3081.1.S1_at10/112+34158581..34160484hypothetical protein
LOC_Os02g55810Os.12270.1.S1_at9/112+34161819..34162475expressed protein
LOC_Os02g55820OsAffx.3082.1.S1_at9/112+34166241..34168129hypothetical protein
LOC_Os02g55830Os.34131.1.S1_s_at10/112+34172692..34174827hAT family dimerisation domain containing protein
LOC_Os02g55840Os.49357.1.S1_at11/112+34176218..34178715expressed protein
LOC_Os02g55840Os.17702.2.S1_x_at1/112+34176218..34178715expressed protein
LOC_Os02g55850OsAffx.24887.1.S1_at11/112+34183635..34184018hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3081.1.S1_at--343--7331Chr02:34160175..34160446 (25 bp)
GTGCAGCATAATCATAAATCAGGGT
LOC_Os02g55800
OsAffx.3081.1.S1_at--475--9831Chr02:34160161..34160184 (24 bp)
TAAATCAGGGTTGGGCAGTTGCTCC
LOC_Os02g55800
OsAffx.3081.1.S1_at--178--9491Chr02:34160131..34160155 (25 bp)
TCTGCTCGAGCCTTGCTTGCAGCGA
LOC_Os02g55800
OsAffx.3081.1.S1_at--1093--4371Chr02:34160032..34160056 (25 bp)
CCAACCTCCTTGCAAGCTCGAGGAA
LOC_Os02g55800
OsAffx.3081.1.S1_at--175--9271Chr02:34160015..34160039 (25 bp)
TCGAGGAAACCTATCTTTGGCCAAA
LOC_Os02g55800
OsAffx.3081.1.S1_at--590--10231Chr02:34160000..34160024 (25 bp)
TTTGGCCAAATATGGCGCTCCAACC
LOC_Os02g55800
OsAffx.3081.1.S1_at--956--2631Chr02:34159979..34160003 (25 bp)
AACCTTCGTGTTGGCTGGATCTGGT
LOC_Os02g55800
OsAffx.3081.1.S1_at--431--7451Chr02:34159872..34159896 (25 bp)
GTGTCGGCCCTCAAGCAGGAGCAGA
LOC_Os02g55800
OsAffx.3081.1.S1_at--302--2791Chr02:34159848..34159872 (25 bp)
AAGAGATGGTGTCCATGTCCGCGCT
LOC_Os02g55800
OsAffx.3081.1.S1_at--79--4551NONE
GCTCGGCCGCAAGATATTCCGAAAT
NONE
OsAffx.3081.1.S1_at--445--8211Chr02:34158801..34158825 (25 bp)
GGAATCTGCAACACCAAAAGTGCTT
LOC_Os02g55800
Target Sequence 
GTGCAGCATAATCATAAATCAGGGTTGGGCAGTTGCTCCTCTGCTCTGCTCGAGCCTTGCTTGCAGCGAGCCTTCCTACC
GACTGCCGCACTGCCATCGCCCTACACCTCCATGGCTCCCTGCCACCTTCGTAGTGGTCGCCGCCAACCTCCTTGCAAGC
TCGAGGAAACCTATCTTTGGCCAAATATGGCGCTCCAACCTTCGTGTTGGCTGGATCTGGTGGATGGGATGGCAGAGTGG
AGCCATTGTAGGGAGGGGGATAGCACCAAAGGATGAGGAGAGCGGAGGAGATGGCGGCCGACAGTGTCGGCCCTCAAGCA
GGAGCAGAAGAGATGGTGTCCATGTCCGCGCTCGGCCGCAAGATATTCCGAAATTGAATTCTATTTCTGAAGAAAATGTT
GTTAACAAAATTGTGGAGATTCAAATTATTCAGCAGGAGACAAAAGACAAACTCTATTTGAAACATAATTCTAGTGGAAT
CTGCAACACCAAAAGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis