Browse Element(s) Details


Os.28065.1.S1_x_at

Description gb:AK067815.1
DB_XREF= gi:32977833
TID=Os.28065.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118P06, full insert sequence.
FL= gb:AK067815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5577011/11expressed protein
LOC_Os02g5567010/11expressed protein
LOC_Os02g557104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55720Os.7287.1.S1_s_at10/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55720Os.7287.1.S1_x_at5/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55729Os.26004.2.S1_at11/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.1.S1_x_at5/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.3.S1_x_at3/112+34122248..34125907hypothetical protein
LOC_Os02g55738Os.12270.1.S1_at5/112+34127623..34128006hypothetical protein
LOC_Os02g55747Os.12270.1.S1_at5/112+34130203..34130586hypothetical protein
LOC_Os02g55756Os.12270.1.S1_at5/112+34132784..34133167hypothetical protein
LOC_Os02g55770Os.28065.1.S1_x_at11/112+34138133..34140940expressed protein
LOC_Os02g55770Os.28065.2.S1_at9/112+34138133..34140940expressed protein
LOC_Os02g55780Os.7287.1.S1_s_at10/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55780Os.7287.1.S1_x_at6/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55790Os.26004.2.S1_at11/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.1.S1_x_at4/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.3.S1_x_at3/112+34152482..34155627hypothetical protein
LOC_Os02g55800OsAffx.3081.1.S1_at10/112+34158581..34160484hypothetical protein
LOC_Os02g55810Os.12270.1.S1_at9/112+34161819..34162475expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28065.1.S1_x_at--606--10013Chr02:34138971..34138995 (25 bp)
TAGCTAGCTACTACTACTCCAGAAG
LOC_Os02g55770
Os.28065.1.S1_x_at--623--5353Chr02:34138950..34138974 (25 bp)
GAAGATACTGATTCCTAGCGGGCAT
LOC_Os02g55770
Os.28065.1.S1_x_at--594--1633Chr02:34138934..34138958 (25 bp)
AGCGGGCATGTGGAGTTGTACTACT
LOC_Os02g55770
Os.28065.1.S1_x_at--588--1193Chr02:34138851..34138875 (25 bp)
AGTAGTATTTATATGGGCACCCAGC
LOC_Os02g55770
Os.28065.1.S1_x_at--266--2453Chr02:34138810..34138834 (25 bp)
AAAATCGAGCGCACACGTACTGTAC
LOC_Os02g55770
Os.28065.1.S1_x_at--308--3653Chr02:34138786..34138810 (25 bp)
CTTACTGCCAGCCACTAACAAGAGT
LOC_Os02g55770
Os.28065.1.S1_x_at--106--5313Chr02:34138744..34138768 (25 bp)
GAAGGTCGCGTATGCTGTTTTTATC
LOC_Os02g55770
Os.28065.1.S1_x_at--965--4733Chr02:34138731..34138755 (25 bp)
GCTGTTTTTATCGTCATTCTCCTAA
LOC_Os02g55770
Os.28065.1.S1_x_at--805--9273Chr02:34138336..34138360 (25 bp)
TCCGGCGCCTGGATGCCTGAAAGAG
LOC_Os02g55770
Os.28065.1.S1_x_at--524--6193Chr02:34138314..34138338 (25 bp)
GAGGCATTAGCCACATGCGCCAAAT
LOC_Os02g55770
Os.28065.1.S1_x_at--318--8413Chr02:34138255..34138279 (25 bp)
GGCCCCTCTCCGCATAAATAATTGT
LOC_Os02g55770
Target Sequence 
TAGCTAGCTACTACTACTCCAGAAGATACTGATTCCTAGCGGGCATGTGGAGTTGTACTACTAGTTAATTAATGGGGCAT
GTTCAATTAATGTTGGTCGCTGTGTGAAGTGGATCGGAGTAGTAGTATTTATATGGGCACCCAGCAGGCAGGGGAGGGAT
CAAAATCGAGCGCACACGTACTGTACTTACTGCCAGCCACTAACAAGAGTCAGACAATGGACTCAAAGAAGGTCGCGTAT
GCTGTTTTTATCGTCATTCTCCTAATGACGGAGGTAGCGGCCGCCGCTGCCGCTGGAGGCAGCGCCCGTGGGACTGGTGG
TACAGGTCACATTAAAGAGTGCGTCAACCACGTCGAAAACCAGTGTGGCTGGGCTCCGGCGCCTGGATGCCTGAAAGAGG
CATTAGCCACATGCGCCAAATAAGGCGCCCGCTGCTTCGCTTCCTCTGGCGGTCTGGCCCCTCTCCGCATAAATAATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28065.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis