Browse Element(s) Details


Os.7287.1.S1_x_at

Description gb:AK072332.1
DB_XREF= gi:32982355
TID=Os.7287.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038L20, full insert sequence.
FL= gb:AK072332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g557806/11Cyclin, N-terminal domain containing protein
LOC_Os02g556805/11Cyclin, N-terminal domain containing protein
LOC_Os02g557205/11Cyclin, N-terminal domain containing protein
LOC_Os02g571802/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55720Os.7287.1.S1_s_at10/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55720Os.7287.1.S1_x_at5/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55729Os.26004.2.S1_at11/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.1.S1_x_at5/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.3.S1_x_at3/112+34122248..34125907hypothetical protein
LOC_Os02g55738Os.12270.1.S1_at5/112+34127623..34128006hypothetical protein
LOC_Os02g55747Os.12270.1.S1_at5/112+34130203..34130586hypothetical protein
LOC_Os02g55756Os.12270.1.S1_at5/112+34132784..34133167hypothetical protein
LOC_Os02g55770Os.28065.1.S1_x_at11/112+34138133..34140940expressed protein
LOC_Os02g55770Os.28065.2.S1_at9/112+34138133..34140940expressed protein
LOC_Os02g55780Os.7287.1.S1_s_at10/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55780Os.7287.1.S1_x_at6/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55790Os.26004.2.S1_at11/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.1.S1_x_at4/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.3.S1_x_at3/112+34152482..34155627hypothetical protein
LOC_Os02g55800OsAffx.3081.1.S1_at10/112+34158581..34160484hypothetical protein
LOC_Os02g55810Os.12270.1.S1_at9/112+34161819..34162475expressed protein
LOC_Os02g55820OsAffx.3082.1.S1_at9/112+34166241..34168129hypothetical protein
LOC_Os02g55830Os.34131.1.S1_s_at10/112+34172692..34174827hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005739cellular_componentmitochondrion
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7287.1.S1_x_at--235--6234Chr02:35010303..35010327 (25 bp)
GAGGCCTGCAACTATGATTGGCACA
LOC_Os02g57180
Os.7287.1.S1_x_at--96--4833Chr02:34143147..34143171 (25 bp)
GCTAAAAATTGATTCCCGGTCTACA
LOC_Os02g55780
Os.7287.1.S1_x_at--360--3971Chr02:34142779..34143155 (25 bp)
CGGTCTACAAAGATTCAGCCTGTTT
LOC_Os02g55780
Os.7287.1.S1_x_at--1027--9074Chr02:35010799..35010823 (25 bp)
TGCTATTGTCAACTCCCTCAAGGAT
LOC_Os02g57180
Os.7287.1.S1_x_at--232--333Chr02:34142563..34142685 (25 bp)
ATACTGTTCATGATCTGGCTGAGCT
LOC_Os02g55780
Os.7287.1.S1_x_at--83--10673Chr02:34142323..34142437 (25 bp)
TTCCTGTTGCAAGGGCTATCGCATC
LOC_Os02g55780
Os.7287.1.S1_x_at--317--4873Chr02:34142309..34142333 (25 bp)
GCTATCGCATCTCCTGAAAGCTGAT
NONE
Os.7287.1.S1_x_at--614--9534Chr09:3345166..3345185 (20 bp)
TCTAACTTTGTTTTGTCTCTACCTC
NONE
Os.7287.1.S1_x_at--311--8733Chr02:34142200..34142224 (25 bp)
TGTCTCTACCTCTCAAATTGTTACT
NONE
Os.7287.1.S1_x_at--379--10193Chr02:34142176..34142200 (25 bp)
TATATATGTACTCTTCAACCTGCCG
NONE
Os.7287.1.S1_x_at--1159--4513Chr02:34142155..34142179 (25 bp)
GCCGCATAGGTTGGCACATGTTTAT
NONE
Target Sequence 
GAGGCCTGCAACTATGATTGGCACAGAAGATCGGATTTTGAACAGATGGGTACAGTTTGCTAAAAATTGATTCCCGGTCT
ACAAAGATTCAGCCTGTTTATGTTGTGGATGTTGCTGCTGCTATTGTCAACTCCCTCAAGGATGATGGCACCAGCATGGG
AAAGAGCTACGGACTTGGTGGACCAGAGATTTATACTGTTCATGATCTGGCTGAGCTGATGTATGAGACAATATGTGAAT
GGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGGTATGAACTTAAATAATATCTTGTGTTGGTCAAGGCGAATGG
CCACGGTACATCGATGTTCCTCTTCCTGTTGCAAGGGCTATCGCATCTCCTGAAAGCTGATAGATTGGGATTTTTTTTTT
CAATACTCTAAGCCTCTAATGAAAGGTGCATATGGACTTTTATTTTAGATGTTCTAACTTTGTTTTGTCTCTACCTCTCA
AATTGTTACTATATATGTACTCTTCAACCTGCCGCATAGGTTGGCACATGTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7287.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis