Browse Element(s) Details


Os.28065.2.S1_at

Description gb:AK072342.1
DB_XREF= gi:32982365
TID=Os.28065.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052N08, full insert sequence.
FL= gb:AK072342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g557109/11hypothetical protein
LOC_Os02g556709/11expressed protein
LOC_Os02g557709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55670Os.28065.1.S1_x_at10/112+34084041..34085489expressed protein
LOC_Os02g55670Os.28065.2.S1_at9/112+34084041..34085489expressed protein
LOC_Os02g55680Os.7287.1.S1_s_at10/112+34088042..34095412Cyclin, N-terminal domain containing protein
LOC_Os02g55680Os.7287.1.S1_x_at5/112+34088042..34095412Cyclin, N-terminal domain containing protein
LOC_Os02g55689Os.26004.2.S1_at11/112+34097699..34101358hypothetical protein
LOC_Os02g55689Os.26004.1.S1_x_at5/112+34097699..34101358hypothetical protein
LOC_Os02g55689Os.26004.3.S1_x_at3/112+34097699..34101358hypothetical protein
LOC_Os02g55698Os.12270.1.S1_at5/112+34103062..34103445hypothetical protein
LOC_Os02g55710Os.28065.2.S1_at9/112+34108581..34109060hypothetical protein
LOC_Os02g55710Os.28065.1.S1_x_at4/112+34108581..34109060hypothetical protein
LOC_Os02g55720Os.7287.1.S1_s_at10/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55720Os.7287.1.S1_x_at5/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55729Os.26004.2.S1_at11/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.1.S1_x_at5/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.3.S1_x_at3/112+34122248..34125907hypothetical protein
LOC_Os02g55738Os.12270.1.S1_at5/112+34127623..34128006hypothetical protein
LOC_Os02g55747Os.12270.1.S1_at5/112+34130203..34130586hypothetical protein
LOC_Os02g55756Os.12270.1.S1_at5/112+34132784..34133167hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28065.2.S1_at--1074--1953Chr02:34138482..34138683 (25 bp)
ACTGGTGGTACAGGTGATCGCGCCA
LOC_Os02g55770
Os.28065.2.S1_at--217--8633Chr02:34138480..34138681 (25 bp)
TGGTGGTACAGGTGATCGCGCCAAC
LOC_Os02g55770
Os.28065.2.S1_at--721--8593Chr02:34138477..34138678 (25 bp)
TGGTACAGGTGATCGCGCCAACGAT
LOC_Os02g55770
Os.28065.2.S1_at--1014--7753Chr02:34138470..34138494 (25 bp)
GGTGATCGCGCCAACGATGAAGAGA
LOC_Os02g55770
Os.28065.2.S1_at--1057--9313Chr02:34138465..34138489 (25 bp)
TCGCGCCAACGATGAAGAGAAATTT
LOC_Os02g55770
Os.28065.2.S1_at--928--4553Chr02:34138463..34138487 (25 bp)
GCGCCAACGATGAAGAGAAATTTAT
LOC_Os02g55770
Os.28065.2.S1_at--781--5594Chr03:20366764..20367103 (25 bp)
GAAATTTATCTTTGGCCATCTGAGC
NONE
Os.28065.2.S1_at--887--10413Chr02:34138442..34138466 (25 bp)
TTATCTTTGGCCATCTGAGCAAAGC
LOC_Os02g55770
Os.28065.2.S1_at--719--10873Chr02:34138436..34138460 (25 bp)
TTGGCCATCTGAGCAAAGCAATATT
LOC_Os02g55770
Os.28065.2.S1_at--503--1751NONE
ACCTCGTCCGAATCGGCACGAGGGT
NONE
Os.28065.2.S1_at--591--491NONE
ATCGGCACGAGGGTCGTGGGTGCCC
NONE
Target Sequence 
ACTGGTGGTACAGGTGATCGCGCCAACGATGAAGAGAAATTTATCTTTGGCCATCTGAGCAAAGCAATATTNATTTACAT
AGCCNGTCACTTCCCAGGTCACATTAAAGAGTGCGTCAACCACGTCGAAAACCAGTGTGGCTGGGCTCCGGNNNNTNNGA
TGCCTGAAAGAGGCATTAGCCACATGCGCCAAATAAGGCGCCCGCTGCTTCGCTTCCTCTGGCGGTCTGGCCCCTCTCCG
CATAAATAATTGTAATAAGGGGTCCTAGTGAATATATATATATATATATATGTGGTACTCACTGCAGTGAGTATGTATTA
TGTACTACTTATTATATAGTAATAAAATTTGAATAAAGTAATATTTGAGCCTGCACCTCGTCCGAATCGGCACGAGGGTC
GTGGGTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28065.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis