Browse Element(s) Details


Os.26004.1.S1_x_at

Description gb:AK065568.1
DB_XREF= gi:32975586
TID=Os.26004.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026L03, full insert sequence.
FL= gb:AK065568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g557295/11hypothetical protein
LOC_Os02g556895/11hypothetical protein
LOC_Os02g557904/11hypothetical protein
LOC_Os04g510602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55689Os.26004.2.S1_at11/112+34097699..34101358hypothetical protein
LOC_Os02g55689Os.26004.1.S1_x_at5/112+34097699..34101358hypothetical protein
LOC_Os02g55689Os.26004.3.S1_x_at3/112+34097699..34101358hypothetical protein
LOC_Os02g55698Os.12270.1.S1_at5/112+34103062..34103445hypothetical protein
LOC_Os02g55710Os.28065.2.S1_at9/112+34108581..34109060hypothetical protein
LOC_Os02g55710Os.28065.1.S1_x_at4/112+34108581..34109060hypothetical protein
LOC_Os02g55720Os.7287.1.S1_s_at10/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55720Os.7287.1.S1_x_at5/112+34112593..34119961Cyclin, N-terminal domain containing protein
LOC_Os02g55729Os.26004.2.S1_at11/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.1.S1_x_at5/112+34122248..34125907hypothetical protein
LOC_Os02g55729Os.26004.3.S1_x_at3/112+34122248..34125907hypothetical protein
LOC_Os02g55738Os.12270.1.S1_at5/112+34127623..34128006hypothetical protein
LOC_Os02g55747Os.12270.1.S1_at5/112+34130203..34130586hypothetical protein
LOC_Os02g55756Os.12270.1.S1_at5/112+34132784..34133167hypothetical protein
LOC_Os02g55770Os.28065.1.S1_x_at11/112+34138133..34140940expressed protein
LOC_Os02g55770Os.28065.2.S1_at9/112+34138133..34140940expressed protein
LOC_Os02g55780Os.7287.1.S1_s_at10/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55780Os.7287.1.S1_x_at6/112+34142310..34149678Cyclin, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26004.1.S1_x_at--609--6796Chr02:34151128..34151152 (25 bp)
GTTATCATGTGTTCAACAGAGCTTA
NONE
Os.26004.1.S1_x_at--275--3737Chr05:14388455..14388497 (25 bp)
CTCACAAACTGGATTCTCGTAGTTA
NONE
Os.26004.1.S1_x_at--448--9235Chr10:18497438..18497462 (25 bp)
TCCATTTGATTTTTGGCGCTCCTCC
NONE
Os.26004.1.S1_x_at--92--10735Chr02:34151256..34151280 (25 bp)
TTGCTCCGATCTGGCCTTAGTGATG
NONE
Os.26004.1.S1_x_at--793--7295Chr02:34151331..34151355 (25 bp)
GTGCGAGTTCGAGATTCCAAGTCCC
NONE
Os.26004.1.S1_x_at--1033--3175Chr02:34151348..34151372 (25 bp)
CAAGTCCCGGTGGTCGGATTTCTCA
NONE
Os.26004.1.S1_x_at--429--2273Chr02:34152472..34152496 (25 bp)
AAATCAGGCGATGACTACCTGCCAC
NONE
Os.26004.1.S1_x_at--992--1913Chr02:34152510..34152534 (25 bp)
ACGGTCAGCCGCCTACACAATAGGC
LOC_Os02g55790
Os.26004.1.S1_x_at--123--9853Chr02:34152523..34152547 (25 bp)
TACACAATAGGCTCCTACACTGCCA
LOC_Os02g55790
Os.26004.1.S1_x_at--1003--6515Chr02:34152905..34152929 (25 bp)
GATTTCTCTAATTGGTACGTACTAA
LOC_Os02g55790
Os.26004.1.S1_x_at--1146--9754Chr02:34152992..34153016 (25 bp)
TAATCCTATTGGTACTCTTTTATCC
LOC_Os02g55790
Target Sequence 
GTTATCATGTGTTCAACAGAGCTTAAAAAATACTCACAAACTGGATTCTCGTAGTTATACAGTTTAAATAAGTTATAAGC
ACGATTTGGGTTTNATGTCTTCCATTTGATTTTTGGCGCTCCTCCCTCTTGCTCCGATCTGGCCTTAGTGATGCCGCCCT
GTTTTCGCGGTTGACCCCGGCACCAGCCCCTTCCTCTGGCCACGTGCGAGTTCGAGATTCCAAGTCCCGGTGGTCGGATT
TCTCAACCCCGGCACTGGCCTCGCACAGGCTGCGATCCGCTCGCCAACAAGGTTCATGAAATCAGGCGATGACTACCTGC
CACAATGCGAAGACAGACGGTCAGCCGCCTACACAATAGGCTCCTACACTGCCACCATCACTGAATGCACATCTGGTCCT
CCCTTATTTNCGTTGGCTTGTGTAGAGAAGAAAAGGTGGAATTGTGGAAGGTAATCGCGGGGAGTTTTGGTTCATTTTTT
GAAGATTTCTCTAATTGGTACGTACTAATTANCCAATTGGAGTTTTGGTCTCGTTACTCNCTGTAAAAACATGATGGTAA
AAANNCAGTTTAATCCTATTGGTACTCTTTTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26004.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis