Browse Element(s) Details


Os.12270.1.S1_at

Description gb:AK064756.1
DB_XREF= gi:32974774
TID=Os.12270.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G05, full insert sequence.
FL= gb:AK064756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5565811/11expressed protein
LOC_Os02g5564911/11expressed protein
LOC_Os02g558109/11expressed protein
LOC_Os02g557385/11hypothetical protein
LOC_Os02g557475/11hypothetical protein
LOC_Os02g556985/11hypothetical protein
LOC_Os02g557565/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55620OsAffx.12656.1.S1_at11/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55620OsAffx.12656.2.S1_at4/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55630Os.20829.1.S1_at11/112+34065186..34069609CobW/P47K family protein, expressed
LOC_Os02g55640Os.13582.1.S1_at10/112+34069969..34072290Proteasome maturation factor UMP1 family protein, expressed
LOC_Os02g55649Os.12270.1.S1_at11/112+34075906..34076612expressed protein
LOC_Os02g55658Os.12270.1.S1_at11/112+34078499..34079116expressed protein
LOC_Os02g55670Os.28065.1.S1_x_at10/112+34084041..34085489expressed protein
LOC_Os02g55670Os.28065.2.S1_at9/112+34084041..34085489expressed protein
LOC_Os02g55680Os.7287.1.S1_s_at10/112+34088042..34095412Cyclin, N-terminal domain containing protein
LOC_Os02g55680Os.7287.1.S1_x_at5/112+34088042..34095412Cyclin, N-terminal domain containing protein
LOC_Os02g55689Os.26004.2.S1_at11/112+34097699..34101358hypothetical protein
LOC_Os02g55689Os.26004.1.S1_x_at5/112+34097699..34101358hypothetical protein
LOC_Os02g55689Os.26004.3.S1_x_at3/112+34097699..34101358hypothetical protein
LOC_Os02g55698Os.12270.1.S1_at5/112+34103062..34103445hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12270.1.S1_at--799--3336Chr02:34132934..34132958 (25 bp)
CACTGTGTAGACATCTGCATCCTCA
LOC_Os02g55756
Os.12270.1.S1_at--1049--9036Chr02:34132949..34132973 (25 bp)
TGCATCCTCACGAACAGGGAACTTT
LOC_Os02g55756
Os.12270.1.S1_at--302--8217Chr02:34162042..34162066 (25 bp)
GGAATGAAGCCCTCGATGGAGCAAT
LOC_Os02g55810
Os.12270.1.S1_at--26--8557Chr02:34162058..34162082 (25 bp)
TGGAGCAATTCAGCGCTTTGTGCAA
LOC_Os02g55810
Os.12270.1.S1_at--967--7297Chr02:34162131..34162155 (25 bp)
GTGCGTAGACAGTTGCATCGTCGAT
LOC_Os02g55810
Os.12270.1.S1_at--146--8817Chr02:34162200..34162224 (25 bp)
TGTTCCCGCACGTGCATGATTGTGT
LOC_Os02g55810
Os.12270.1.S1_at--1124--6597Chr02:34162217..34162241 (25 bp)
GATTGTGTCGAGCTGCACATCTGTT
LOC_Os02g55810
Os.12270.1.S1_at--193--8817Chr02:34162238..34162262 (25 bp)
TGTTCCTTCATCCATGATCGAGGGA
LOC_Os02g55810
Os.12270.1.S1_at--541--3397Chr02:34162287..34162311 (25 bp)
CAGCGGTCGGCCTTGTATTACATTG
LOC_Os02g55810
Os.12270.1.S1_at--831--8817Chr02:34162315..34162339 (25 bp)
TGTTGTTCCTTTTGCCTCTTCAATT
LOC_Os02g55810
Os.12270.1.S1_at--590--8858Chr02:34162371..34162395 (25 bp)
TGATCGATCTGGTCTGTTGTTCTAC
LOC_Os02g55810
Target Sequence 
CACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGATGGAGCA
ATTCAGCGCTTTGTGCAATGAGGGGTGTAGCAAAGAATTTAAGGAGGATCCTGCCACCAACAAGAAGTGCGTAGACAGTT
GCATCGTCGATGCTAAGGAACTCAATGGACACTTAGCGAAAGGTGGCGCTTCTAGTGTTCCCGCACGTGCATGATTGTGT
CGAGCTGCACATCTGTTCCTTCATCCATGATCGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTAT
TACATTGTCCTGTTGTTCCTTTTGCCTCTTCAATTGTTTCATTATTTGGTGTTCATAACTTCTATGTGATCGATCTGGTC
TGTTGTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis