Browse Element(s) Details


OsAffx.12656.2.S1_at

Description tigr:9630.m00792
TID=OsAffx.12656.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0834010/11hAT family dimerisation domain containing protein
LOC_Os02g556204/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08290NANA2+4403220..4406550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08300Os.14778.1.S1_at11/112+4407955..4412769DNA repair protein RAD23, putative, expressed
LOC_Os02g08310OsAffx.11940.1.S1_at11/112+4412799..4415057tubby family protein, putative, expressed
LOC_Os02g08320Os.16797.1.S1_at11/112+4423143..4424222Haemolysin-III related family protein, expressed
LOC_Os02g08330Os.56789.1.S1_at11/112+4424446..4426617expressed protein
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein
LOC_Os02g08360OsAffx.24164.1.S1_x_at11/112+4440199..4448745RNA recognition motif, putative, expressed
LOC_Os02g08370Os.18975.1.S1_at11/112+4454853..4457731Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12656.2.S1_at--1094--1311Chr02:4430035..4430285 (25 bp)
AGATGGCAGCTAGCAAAGCCAGTTC
LOC_Os02g08340
OsAffx.12656.2.S1_at--974--5131Chr02:4430277..4430297 (21 bp)
GCAAAGCCAGTTCAGTGTCATCAGA
LOC_Os02g08340
OsAffx.12656.2.S1_at--1006--10571Chr02:4430343..4430367 (25 bp)
TTCTCTATGCCCAACAATGGTTGAG
LOC_Os02g08340
OsAffx.12656.2.S1_at--356--4552Chr02:4430351..4430375 (25 bp)
GCCCAACAATGGTTGAGGCGTTGAT
LOC_Os02g08340
OsAffx.12656.2.S1_at--1131--892Chr02:4430366..4430390 (25 bp)
AGGCGTTGATATGTGCTTCTAGCTG
LOC_Os02g08340
OsAffx.12656.2.S1_at--421--3652Chr02:4430381..4430405 (25 bp)
CTTCTAGCTGGATTAGAGGCGCTCC
LOC_Os02g08340
OsAffx.12656.2.S1_at--1025--1312Chr02:4430395..4430416 (22 bp)
AGAGGCGCTCCAATGATTACGGCAG
LOC_Os02g08340
OsAffx.12656.2.S1_at--329--3811Chr02:4430402..4430521 (25 bp)
CTCCAATGATTACGGCAGCAGAAGA
LOC_Os02g08340
OsAffx.12656.2.S1_at--186--7351NONE
GTGCAAAGCAACTATATTTACTTGC
NONE
OsAffx.12656.2.S1_at--143--192Chr02:4431102..4431126 (25 bp)
ATTTACTTGCTGCTGTACATCACAA
LOC_Os02g08340
OsAffx.12656.2.S1_at--443--10712Chr02:4431108..4431132 (25 bp)
TTGCTGCTGTACATCACAAGCTGGC
LOC_Os02g08340
Target Sequence 
AGATGGCAGCTAGCAAAGCCAGTTCAGTGTCATCAGAATCTACTTTTAGTGCTGGGGGAAGAGTTCTAAGTGATTATCGT
AGTTCTCTATGCCCAACAATGGTTGAGGCGTTGATATGTGCTTCTAGCTGGATTAGAGGCGCTCCAATGATTACGGCAGC
AGAAGAAGAAGAGGATGTTGAGAGTATTACATTTCCTCAAAGTGTAGTGCAAAGCAACTATATTTACTTGCTGCTGTACA
TCACAAGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12656.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis