Browse Element(s) Details


Os.14617.1.S1_at

Description gb:BI806675
DB_XREF= gi:15853879
DB_XREF=S073B02
CLONE=S073B02
TID=Os.14617.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14617 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g083405/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08290NANA2+4403220..4406550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08300Os.14778.1.S1_at11/112+4407955..4412769DNA repair protein RAD23, putative, expressed
LOC_Os02g08310OsAffx.11940.1.S1_at11/112+4412799..4415057tubby family protein, putative, expressed
LOC_Os02g08320Os.16797.1.S1_at11/112+4423143..4424222Haemolysin-III related family protein, expressed
LOC_Os02g08330Os.56789.1.S1_at11/112+4424446..4426617expressed protein
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein
LOC_Os02g08360OsAffx.24164.1.S1_x_at11/112+4440199..4448745RNA recognition motif, putative, expressed
LOC_Os02g08370Os.18975.1.S1_at11/112+4454853..4457731Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14617.1.S1_at--1029--8931Chr09:7228055..7228078 (24 bp)
TGACGACAATTCATGCATCACGCCG
NONE
Os.14617.1.S1_at--663--3131NONE
AATTCATGCATCACGCCGCATACGA
NONE
Os.14617.1.S1_at--1096--8471NONE
TGGCTCATGGCTGGAACATGTTCCT
NONE
Os.14617.1.S1_at--451--2111NONE
ACATGTTCCTGTGGAGTGTGGAGAA
NONE
Os.14617.1.S1_at--811--8013Chr02:4430730..4430754 (25 bp)
GGAGATTTGGAGAGTTCCTTTTAAT
LOC_Os02g08340
Os.14617.1.S1_at--749--3112Chr02:4430797..4430821 (25 bp)
AATTTGAGAATGGAGACTTTGGACT
LOC_Os02g08340
Os.14617.1.S1_at--1102--2032Chr02:4430819..4430842 (24 bp)
ACTTTTGGAATGTGGTCTACTCTAC
LOC_Os02g08340
Os.14617.1.S1_at--905--2971NONE
AATGTGGTCTACTCTACCCTATGTA
NONE
Os.14617.1.S1_at--366--3771NONE
CTCTACCCTATGTACTCTCTATAAG
NONE
Os.14617.1.S1_at--132--152Chr02:4430874..4430898 (25 bp)
ATTACTCTATGCTTCTATTATGGTG
LOC_Os02g08340
Os.14617.1.S1_at--409--4912Chr02:4430884..4430908 (25 bp)
GCTTCTATTATGGTGTGGTCATGAC
LOC_Os02g08340
Target Sequence 
TGACGACAATTCATGCATCACGCCGCATACGACGAGCCTAGGATGAAGAGGCAAATGGATGGCTCATGGCTGGAACATGT
TCCTGTGGAGTGTGGAGAAAGTCTAGGAGTTGGAGATTTGGAGAGTTCCTTTTAATATTTTGCGAAATAATAATTAGATG
TTCTATAATTATTTTGTGAATTTGAGAATGGAGACTTTGGACTTTTGGAATGTGGTCTACTCTACCCTATGTACTCTCTA
TAAGACTATAACTATATTACTCTATGCTTCTATTATGGTGTGGTCATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis