Browse Element(s) Details


OsAffx.12656.1.S1_at

Description tigr:9630.m05527
TID=OsAffx.12656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5562011/11hAT family dimerisation domain containing protein
LOC_Os02g083405/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55590Os.6403.1.S1_at11/112+34035669..34040394expressed protein
LOC_Os02g55600Os.20333.1.S1_at11/112+34047313..34047921expressed protein
LOC_Os02g55610NANA2+34052272..34053164serine-rich protein, putative, expressed
LOC_Os02g55620OsAffx.12656.1.S1_at11/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55620OsAffx.12656.2.S1_at4/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55630Os.20829.1.S1_at11/112+34065186..34069609CobW/P47K family protein, expressed
LOC_Os02g55640Os.13582.1.S1_at10/112+34069969..34072290Proteasome maturation factor UMP1 family protein, expressed
LOC_Os02g55649Os.12270.1.S1_at11/112+34075906..34076612expressed protein
LOC_Os02g55658Os.12270.1.S1_at11/112+34078499..34079116expressed protein
LOC_Os02g55670Os.28065.1.S1_x_at10/112+34084041..34085489expressed protein
LOC_Os02g55670Os.28065.2.S1_at9/112+34084041..34085489expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12656.1.S1_at--89--5932Chr02:4430057..4430081 (25 bp)
GAGCTTGAGAGCTTCATCATCAGTT
LOC_Os02g08340
OsAffx.12656.1.S1_at--540--5672Chr02:4430091..4430115 (25 bp)
GACATAAACAAGTCTCTACCCTCTG
LOC_Os02g08340
OsAffx.12656.1.S1_at--666--3711Chr02:34059043..34059067 (25 bp)
CTACCCTCTGTTTCAAGCAATTTTC
LOC_Os02g55620
OsAffx.12656.1.S1_at--616--6831Chr02:34059034..34059058 (25 bp)
GTTTCAAGCAATTTTCAGTCCTATT
LOC_Os02g55620
OsAffx.12656.1.S1_at--707--3451Chr02:34059019..34059043 (25 bp)
CAGTCCTATTTGCAATCTTCTTCTG
LOC_Os02g55620
OsAffx.12656.1.S1_at--1000--6332Chr02:4430174..4430198 (25 bp)
GATGCTTTTATATCTTGATGAACGA
LOC_Os02g08340
OsAffx.12656.1.S1_at--342--5451Chr02:34058956..34058980 (25 bp)
GAACGAAATGAGGACTTAGCAAACA
LOC_Os02g55620
OsAffx.12656.1.S1_at--720--4892Chr02:4430220..4430244 (25 bp)
GCTTTTGATCTACTTGTGTGGTGGA
LOC_Os02g08340
OsAffx.12656.1.S1_at--511--5271Chr02:34058900..34058924 (25 bp)
GAATGCTCATAGATACCCGGTGGTA
LOC_Os02g55620
OsAffx.12656.1.S1_at--690--9951Chr02:34058887..34058911 (25 bp)
TACCCGGTGGTATCTATGATGGCTA
LOC_Os02g55620
OsAffx.12656.1.S1_at--914--8312Chr02:4430253..4430277 (25 bp)
GGCTAAGAACTTTTTGACTATACCA
LOC_Os02g08340
Target Sequence 
GAGCTTGAGAGCTTCATCATCAGTTTCAACTTTTGACATAAACAAGTCTCTACCCTCTGTTTCAAGCAATTTTCAGTCCT
ATTTGCAATCTTCTTCTGAAGATGCATCAAAGTCTGAGATGCTTTTATATCTTGATGAACGAAATGAGGACTTAGCAAAC
AAAGCTTTTGATCTACTTGTGTGGTGGAAGTTGAATGCTCATAGATACCCGGTGGTATCTATGATGGCTAAGAACTTTTT
GACTATACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis