Browse Element(s) Details


Os.6403.1.S1_at

Description gb:AK064917.1
DB_XREF= gi:32974935
TID=Os.6403.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000M19, full insert sequence.
FL= gb:AK064917.1 gb:AK061912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5559011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55550Os.49445.1.S1_at11/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55550Os.45957.3.S1_x_at9/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55560Os.13743.1.S1_at11/112+34020405..34024416DNA-binding protein phosphatase 2C, putative, expressed
LOC_Os02g55570OsAffx.3080.1.S1_at11/112+34025278..34028418Shugoshin C terminus family protein, expressed
LOC_Os02g55580OsAffx.12655.1.S1_at11/112+34030746..34031137hypothetical protein
LOC_Os02g55590Os.6403.1.S1_at11/112+34035669..34040394expressed protein
LOC_Os02g55600Os.20333.1.S1_at11/112+34047313..34047921expressed protein
LOC_Os02g55610NANA2+34052272..34053164serine-rich protein, putative, expressed
LOC_Os02g55620OsAffx.12656.1.S1_at11/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55620OsAffx.12656.2.S1_at4/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55630Os.20829.1.S1_at11/112+34065186..34069609CobW/P47K family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6403.1.S1_at--424--1491Chr02:34039893..34039917 (25 bp)
AGCAAATGGGTTTACGTCGGCCTGG
LOC_Os02g55590
Os.6403.1.S1_at--601--7391Chr02:34039917..34039941 (25 bp)
GTGATGGTTTCGTCGGCCGTTATGC
LOC_Os02g55590
Os.6403.1.S1_at--992--8451Chr02:34040033..34040057 (25 bp)
TGGCCCGGACGCTTGATGCATATGG
LOC_Os02g55590
Os.6403.1.S1_at--865--631Chr02:34040048..34040072 (25 bp)
ATGCATATGGCCGATGCTGTGCTGC
LOC_Os02g55590
Os.6403.1.S1_at--914--3411Chr02:34040072..34040096 (25 bp)
CAGAAGAATCTCCATGTCCATACTC
LOC_Os02g55590
Os.6403.1.S1_at--57--10631Chr02:34040097..34040121 (25 bp)
TTCGTGCCTGTCATCATCATGTAGA
LOC_Os02g55590
Os.6403.1.S1_at--432--411Chr02:34040112..34040136 (25 bp)
ATCATGTAGATCACCGTGCCTTCTG
LOC_Os02g55590
Os.6403.1.S1_at--83--7291Chr02:34040127..34040151 (25 bp)
GTGCCTTCTGATTGTTCGTTGGTTA
LOC_Os02g55590
Os.6403.1.S1_at--1052--6491Chr02:34040296..34040320 (25 bp)
GATAGATTTCTGACTTTGTGCCATT
LOC_Os02g55590
Os.6403.1.S1_at--738--6071Chr02:34040322..34040346 (25 bp)
GAGTTTCAGTTTGTGTACCTGCTGC
LOC_Os02g55590
Os.6403.1.S1_at--453--751Chr02:34040352..34040376 (25 bp)
ATGTACAGTCATCATGGTCCAGAAG
LOC_Os02g55590
Target Sequence 
AGCAAATGGGTTTACGTCGGCCTGGTGATGGTTTCGTCGGCCGTTATGCTCTCCCTCGTCTTCTGGGTGATCTACGCCAG
GGAGCGGCGCCACCGTGCGTACAGCAAACAGCACAACTACGCTGACAAGCCGCATCCGACTGGCCCGGACGCTTGATGCA
TATGGCCGATGCTGTGCTGCAGAAGAATCTCCATGTCCATACTCTTCGTGCCTGTCATCATCATGTAGATCACCGTGCCT
TCTGATTGTTCGTTGGTTACACCGATCCTGTCCTCTTCTTTTTTTTTCTTNTTTTTTTTGTTGTAGCATTGATGTGAATT
ATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAAC
TTGAGATAGATTTCTGACTTTGTGCCATTAGAGTTTCAGTTTGTGTACCTGCTGCNGNTGATGTACAGTCATCATGGTCC
AGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis