Browse Element(s) Details


Os.13743.1.S1_at

Description gb:AK099720.1
DB_XREF= gi:32984929
TID=Os.13743.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.13743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088F12, full insert sequence.
FL= gb:AK099720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5556011/11DNA-binding protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55530Os.24368.1.S1_at11/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55530OsAffx.27328.1.S1_at1/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55540OsAffx.24885.1.S1_at11/112+34002376..34004220F-box family protein, putative, expressed
LOC_Os02g55550Os.49445.1.S1_at11/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55550Os.45957.3.S1_x_at9/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55560Os.13743.1.S1_at11/112+34020405..34024416DNA-binding protein phosphatase 2C, putative, expressed
LOC_Os02g55570OsAffx.3080.1.S1_at11/112+34025278..34028418Shugoshin C terminus family protein, expressed
LOC_Os02g55580OsAffx.12655.1.S1_at11/112+34030746..34031137hypothetical protein
LOC_Os02g55590Os.6403.1.S1_at11/112+34035669..34040394expressed protein
LOC_Os02g55600Os.20333.1.S1_at11/112+34047313..34047921expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13743.1.S1_at--221--7931Chr02:34023823..34023847 (25 bp)
GGATTTCACCAGGAAGAGGCTCCAA
LOC_Os02g55560
Os.13743.1.S1_at--324--2631Chr02:34023917..34023941 (25 bp)
AACCTAACGGCGGTGATGGTCTCAT
LOC_Os02g55560
Os.13743.1.S1_at--986--8871Chr02:34023930..34023954 (25 bp)
TGATGGTCTCATTCCACCAGGAGGC
LOC_Os02g55560
Os.13743.1.S1_at--364--5931Chr02:34023997..34024021 (25 bp)
GAGCATATCGGCTGAAGGGCTTCAC
LOC_Os02g55560
Os.13743.1.S1_at--59--2891Chr02:34024011..34024035 (25 bp)
AAGGGCTTCACAGCCTCAGGGTGCT
LOC_Os02g55560
Os.13743.1.S1_at--1041--9211Chr02:34024056..34024080 (25 bp)
TCCACTGCTATCATCAGCCTTGAAG
LOC_Os02g55560
Os.13743.1.S1_at--273--7411Chr02:34024145..34024169 (25 bp)
GTGATTTTCGGCATCTTGCTGTTTA
LOC_Os02g55560
Os.13743.1.S1_at--622--3031Chr02:34024175..34024199 (25 bp)
AATCCATTGTCGACATTCCAGTGTG
LOC_Os02g55560
Os.13743.1.S1_at--1024--5431Chr02:34024226..34024250 (25 bp)
GAACCTGAGATCTCACCTTGCATTG
LOC_Os02g55560
Os.13743.1.S1_at--1125--1731Chr02:34024240..34024264 (25 bp)
ACCTTGCATTGTGAGGCCCAGGCAT
LOC_Os02g55560
Os.13743.1.S1_at--450--151Chr02:34024332..34024356 (25 bp)
ATTATGCGATGTATTCCCCTGTCAT
LOC_Os02g55560
Target Sequence 
GGATTTCACCAGGAAGAGGCTCCAAGAGCACAATGACTTGAGGTTGTGCTGCAAGCAGATCGTCGAGGAGGCAATAAGGC
GAGGGGCCTCAGACAACCTAACGGCGGTGATGGTCTCATTCCACCAGGAGGCCCCTCCTCAGCTCAGAGTGAACAGGACG
GGGAGGGTCGAGCGGAGCATATCGGCTGAAGGGCTTCACAGCCTCAGGGTGCTCCTGGAAGGCCAANTGATANCTCCACT
GCTATCATCAGCCTTGAAGTTGTGCAGAATTGAAGAGAAACCTTATCTTGATGTTGTGCAGAATTGAAGAGCAACTGTAT
TTAGTGATTTTCGGCATCTTGCTGTTTACCCCCAATCCATTGTCGACATTCCAGTGTGTGTTATTGTGTGAGAATAAAAC
CAACGAACCTGAGATCTCACCTTGCATTGTGAGGCCCAGGCATTGTAAATAAGTTGGGAGATAGTAGGTAAGGAGTGTGA
GTAGTGTGCATCCAGGGGGCTTTGAGGCTCATTATGCGATGTATTCCCCTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis