Browse Element(s) Details


Os.24368.1.S1_at

Description gb:AK101070.1
DB_XREF= gi:32986279
TID=Os.24368.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023P18, full insert sequence.
FL= gb:AK103079.1 gb:AK101070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5553011/11Neurochondrin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55480Os.18565.1.S1_at11/112+33969953..33972499Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55489NANA2+33973889..33974186NA
LOC_Os02g55500Os.6591.1.S1_at11/112+33977061..33977762expressed protein
LOC_Os02g55510Os.6591.1.S1_at11/112+33980599..33981803hypothetical protein
LOC_Os02g55520Os.18962.1.S1_at9/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55520Os.9329.1.S1_at6/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55530Os.24368.1.S1_at11/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55530OsAffx.27328.1.S1_at1/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55540OsAffx.24885.1.S1_at11/112+34002376..34004220F-box family protein, putative, expressed
LOC_Os02g55550Os.49445.1.S1_at11/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55550Os.45957.3.S1_x_at9/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55560Os.13743.1.S1_at11/112+34020405..34024416DNA-binding protein phosphatase 2C, putative, expressed
LOC_Os02g55570OsAffx.3080.1.S1_at11/112+34025278..34028418Shugoshin C terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24368.1.S1_at--242--5351Chr02:34000452..34000476 (25 bp)
GAAGTTGTCAAAGCTCATTGCCAGA
LOC_Os02g55530
Os.24368.1.S1_at--252--3471Chr02:34000579..34000603 (25 bp)
CAGGGCATTCCTGACGACGACATAG
LOC_Os02g55530
Os.24368.1.S1_at--696--551Chr02:34000805..34000829 (25 bp)
ATCCTGCAGCAGCATGTTTCTGTGT
LOC_Os02g55530
Os.24368.1.S1_at--274--6551Chr02:34000830..34000854 (25 bp)
GATTTTCTGCTTATGATTGCCGTCA
LOC_Os02g55530
Os.24368.1.S1_at--288--6591Chr02:34000844..34000868 (25 bp)
GATTGCCGTCAATCTCTTGTCAAAA
LOC_Os02g55530
Os.24368.1.S1_at--897--1211Chr02:34000899..34000923 (25 bp)
AGTTAAAGTATACCCGTGCCTGATA
LOC_Os02g55530
Os.24368.1.S1_at--298--7291Chr02:34000914..34000938 (25 bp)
GTGCCTGATATTCTTCAATCTTAAG
LOC_Os02g55530
Os.24368.1.S1_at--464--591Chr02:34001033..34001057 (25 bp)
ATGCCAATGCATTCTTTGTGGGTGC
LOC_Os02g55530
Os.24368.1.S1_at--538--7851Chr02:34001075..34001099 (25 bp)
GGTAGTTCCTCCATGTAACAGCTAG
LOC_Os02g55530
Os.24368.1.S1_at--509--8771Chr02:34001136..34001160 (25 bp)
TGTATACAGTGTCGCGTTGCTTGGC
LOC_Os02g55530
Os.24368.1.S1_at--195--5231Chr02:34001281..34001305 (25 bp)
GAATTTGTTTCGCTTGTGCGCACTT
LOC_Os02g55530
Target Sequence 
GAAGTTGTCAAAGCTCATTGCCAGAAGTTTGCATCAGGGCATTCCTGACGACGACATAGAACAATCCAACCAAAAGCAAA
TCATACTATCAGGTTACAGGAGGTGGTNTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGA
TTTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATAC
CCGTGCCTGATATTCTTCAATCTTAAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTAC
GGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTG
CTTGGCAGTGCNCCATATTGGAAGGAGTAGATGCGAAGGGAAAATGTACATATTCNCCTTTTGTCTGTTGTATCGACGAG
TATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAATAACTCGCTTGAATTTGTTTCGCTTGTGCGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis