Browse Element(s) Details


Os.9329.1.S1_at

Description gb:CA998792
DB_XREF= gi:27576098
DB_XREF=S345M_D03
TID=Os.9329.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9329 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3419011/11hypothetical protein
LOC_Os02g555206/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g276301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34160NANA2+20420699..20428258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34170NANA2+20431336..20434560transposon protein, putative, unclassified
LOC_Os02g34180NANA2+20435190..20441348transposon protein, putative, unclassified
LOC_Os02g34190Os.9329.1.S1_at11/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.3.S1_at9/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.2.S1_at1/112+20444676..20448737hypothetical protein
LOC_Os02g34200Os.26886.1.S1_x_at8/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200Os.26886.3.S1_x_at4/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200OsAffx.16244.1.S1_x_at1/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34210OsAffx.16467.1.S1_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.2.S1_s_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.6.S1_s_at8/112+20460825..20462776hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_x_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34240OsAffx.12345.1.S1_at9/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34240OsAffx.9423.1.S1_x_at1/112+20469152..20470681transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9329.1.S1_at--564--6572Chr02:20447526..20447550 (25 bp)
GATTCTTCACATGTATTGGATGAAA
LOC_Os02g34190
Os.9329.1.S1_at--165--8172Chr02:20447672..20447696 (25 bp)
GGAACAGTGAGATTCTTACCATTCA
LOC_Os02g34190
Os.9329.1.S1_at--411--7393Chr02:20447678..20447702 (25 bp)
GTGAGATTCTTACCATTCAAATTTT
LOC_Os02g34190
Os.9329.1.S1_at--754--172Chr02:20447706..20447730 (25 bp)
ATTTACTTGTTGTCACCTAGGGCCA
LOC_Os02g34190
Os.9329.1.S1_at--611--3593Chr02:20447711..20447735 (25 bp)
CTTGTTGTCACCTAGGGCCAAAAAT
LOC_Os02g34190
Os.9329.1.S1_at--180--8453Chr02:20447726..20447750 (25 bp)
GGCCAAAAATAGTTCTGAGTGTCAT
LOC_Os02g34190
Os.9329.1.S1_at--866--5371Chr02:20447752..20447776 (25 bp)
GAAGAATGTCAAGTTCGCCGCTACA
LOC_Os02g34190
Os.9329.1.S1_at--75--10651Chr02:20447765..20447789 (25 bp)
TTCGCCGCTACAAATGCATCACATT
LOC_Os02g34190
Os.9329.1.S1_at--166--9071Chr02:20447779..20447803 (25 bp)
TGCATCACATTATCTTACGCGTTTG
LOC_Os02g34190
Os.9329.1.S1_at--532--5592Chr02:20447803..20447827 (25 bp)
GAAATAACTATGCTGTTCATGTCCA
LOC_Os02g34190
Os.9329.1.S1_at--23--4752Chr02:20447814..20447838 (25 bp)
GCTGTTCATGTCCATTATCCATCAA
LOC_Os02g34190
Target Sequence 
GATTCTTCACATGTATTGGATGAAATTCATCGGCAANNTNNNNCANTTTNNNNNNNNNTNGNNNNNNNNCAGGCTCCAGA
ATCCGTGGTTAATTCATTACCATGTAAGAGCTACAAAAAGCAGACAGCCCAATGCAGTGATAACATGGAACAGTGAGATT
CTTACCATTCAAATTTTATCATTTACTTGTTGTCACCTAGGGCCAAAAATAGTTCTGAGTGTCATTGAAGAATGTCAAGT
TCGCCGCTACAAATGCATCACATTATCTTACGCGTTTGAAATAACTATGCTGTTCATGTCCATTATCCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis