Browse Element(s) Details


OsAffx.24566.1.S1_x_at

Description tigr:9630.m03255
TID=OsAffx.24566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3422011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34180NANA2+20435190..20441348transposon protein, putative, unclassified
LOC_Os02g34190Os.9329.1.S1_at11/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.3.S1_at9/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.2.S1_at1/112+20444676..20448737hypothetical protein
LOC_Os02g34200Os.26886.1.S1_x_at8/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200Os.26886.3.S1_x_at4/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200OsAffx.16244.1.S1_x_at1/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34210OsAffx.16467.1.S1_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.2.S1_s_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.6.S1_s_at8/112+20460825..20462776hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_x_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34240OsAffx.12345.1.S1_at9/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34240OsAffx.9423.1.S1_x_at1/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34250OsAffx.2855.1.S1_at11/112+20483394..20484110expressed protein
LOC_Os02g34260Os.55316.1.S1_at5/112+20485245..20486000AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24566.1.S1_x_at--549--5371Chr02:20464844..20464868 (25 bp)
GAAGACAGCGAGAAGCCACTTGTGA
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--993--4611Chr02:20464837..20464861 (25 bp)
GCGAGAAGCCACTTGTGAAGGAGCC
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--17--5311Chr02:20464821..20464845 (25 bp)
GAAGGAGCCCTTGCCGCAGGCGGAG
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--488--891Chr02:20464804..20464828 (25 bp)
AGGCGGAGGTCGACTTCATCCTGGC
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--583--4091Chr02:20464752..20464776 (25 bp)
CGACGACGTCCACTGGGCGCTTCTC
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--336--8131Chr02:20464671..20464695 (25 bp)
GGACAGCTTCGAGGAATTCCAGGAC
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--464--2151Chr02:20464669..20464693 (25 bp)
ACAGCTTCGAGGAATTCCAGGACGA
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--751--8211Chr02:20464584..20464683 (25 bp)
GGAATTCCAGGACGAGGCTCAGCTC
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--467--91Chr02:20464581..20464680 (25 bp)
ATTCCAGGACGAGGCTCAGCTCAAG
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--771--2911Chr02:20464555..20464579 (25 bp)
AAGGATGGGCCGCTATCGACTGGAG
LOC_Os02g34220
OsAffx.24566.1.S1_x_at--383--4831Chr02:20464544..20464568 (25 bp)
GCTATCGACTGGAGCGACGTCGTCT
LOC_Os02g34220
Target Sequence 
GAAGACAGCGAGAAGCCACTTGTGAAGGAGCCCTTGCCGCAGGCGGAGGTCGACTTCATCCTGGCGTGGAAGAGGGAGCC
ATCCCCCTGCCCCGACGACGTCCACTGGGCGCTTCTCTCGCCGGAGCAGCGCCAGCTGCATGAGGAGATGGCTGCCATGG
GCAAGGAGTTCGAGGACAGCTTCGAGGAATTCCAGGACGAGGCTCAGCTCAAGGAAGGATGGGCCGCTATCGACTGGAGC
GACGTCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24566.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis