Browse Element(s) Details


OsAffx.30061.2.S1_at

Description tigr:9637.m02425
TID=OsAffx.30061.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g276308/11hypothetical protein
LOC_Os02g341901/11hypothetical protein
LOC_Os05g243601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27590OsAffx.17935.1.S1_at9/119+16764918..16766766expressed protein
LOC_Os09g27599NANA9+16770555..16771000NA
LOC_Os09g27610Os.56297.1.S1_at7/119+16780151..16783470hypothetical protein
LOC_Os09g27620OsAffx.17936.1.S1_s_at11/119+16785040..16787398PHD-finger family protein, expressed
LOC_Os09g27630OsAffx.30061.2.S1_at8/119+16791513..16794853hypothetical protein
LOC_Os09g27630OsAffx.30061.3.S1_at2/119+16791513..16794853hypothetical protein
LOC_Os09g27630Os.9329.1.S1_at1/119+16791513..16794853hypothetical protein
LOC_Os09g27640NANA9+16798951..16800494hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30061.2.S1_at--1083--8872Chr09:16794344..16794368 (25 bp)
TGAGGGAAGTGCTGGCAACTGTCAT
LOC_Os09g27630
OsAffx.30061.2.S1_at--752--8272Chr02:20444691..20444715 (25 bp)
GGCATGATGCGGATGTCGGCTGCGA
LOC_Os02g34190
OsAffx.30061.2.S1_at--148--4911Chr09:16793835..16794149 (25 bp)
GCTTCACCTGAAGGCTAGATATCTT
LOC_Os09g27630
OsAffx.30061.2.S1_at--702--6511Chr09:16793818..16793842 (25 bp)
GATATCTTGAGGACGAGAAACCCTT
LOC_Os09g27630
OsAffx.30061.2.S1_at--775--5972Chr09:16793804..16793828 (25 bp)
GAGAAACCCTTAAAATCATATGCTT
LOC_Os09g27630
OsAffx.30061.2.S1_at--633--3071Chr09:16793791..16793815 (25 bp)
AATCATATGCTTACCCCATGTTGGA
LOC_Os09g27630
OsAffx.30061.2.S1_at--692--631Chr09:16793790..16793809 (20 bp)
ATGCTTACCCCATGTTGGAGAACCT
LOC_Os09g27630
OsAffx.30061.2.S1_at--10--1811NONE
ACCCCATGTTGGAGAACCTAGACAA
NONE
OsAffx.30061.2.S1_at--294--8071NONE
GGAGCAACTGCTACACTGCGGCCTC
NONE
OsAffx.30061.2.S1_at--277--3251NONE
CAACTGCTACACTGCGGCCTCGGTG
NONE
OsAffx.30061.2.S1_at--189--2231Chr09:16791958..16792149 (25 bp)
ACAAGTGCAAGGAGCTAAGTATGTT
LOC_Os09g27630
Target Sequence 
TGAGGGAAGTGCTGGCAACTGTCATGGGCATGATGCGGATGTCGGCTGCGAGGAGGAGGAGGACCAAACATGTGTCGATC
AGATGCTGCGTGACGGGGAGAGATTTGACACTGATGATAGGGAATATCACAAGTTCACAACTAGGGTGAAGGACTCCAAA
ACTCCAGTTTACAATGGATGTAAGACGGAGCACAGCAAGCTCCAAGTGGTCCTATCGCTGCTTCACCTGAAGGCTAGATA
TCTTGAGGACGAGAAACCCTTAAAATCATATGCTTACCCCATGTTGGAGAACCTAGACAAGGAAGGGCTCTTGGAGCAAC
TGCTACACTGCGGCCTCGGTGCCGGTGAAGTGACCGCGCGCGTTGAGGGTGTTGGTGGCGCCGGGCAGCAGTGCCCTTCC
TGCGCGGTGGACAAGTGCAAGGAGCTAAGTATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30061.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis