Browse Element(s) Details


OsAffx.17935.1.S1_at

Description tigr:9637.m02421
TID=OsAffx.17935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g275909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein
LOC_Os09g27570Os.52986.1.S1_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27570Os.52986.1.S2_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27590OsAffx.17935.1.S1_at9/119+16764918..16766766expressed protein
LOC_Os09g27599NANA9+16770555..16771000NA
LOC_Os09g27610Os.56297.1.S1_at7/119+16780151..16783470hypothetical protein
LOC_Os09g27620OsAffx.17936.1.S1_s_at11/119+16785040..16787398PHD-finger family protein, expressed
LOC_Os09g27630OsAffx.30061.2.S1_at8/119+16791513..16794853hypothetical protein
LOC_Os09g27630OsAffx.30061.3.S1_at2/119+16791513..16794853hypothetical protein
LOC_Os09g27630Os.9329.1.S1_at1/119+16791513..16794853hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17935.1.S1_at--309--9211NONE
TCCAACTTCTTCTACGACGACGATG
NONE
OsAffx.17935.1.S1_at--957--5771Chr09:16766182..16766206 (25 bp)
GACGACGATGATCTCCTGGGCTCGA
LOC_Os09g27590
OsAffx.17935.1.S1_at--830--6411Chr09:16766191..16766215 (25 bp)
GATCTCCTGGGCTCGATTTTCTCGA
LOC_Os09g27590
OsAffx.17935.1.S1_at--471--9391Chr09:16766203..16766227 (25 bp)
TCGATTTTCTCGACGGGTCCCACAT
LOC_Os09g27590
OsAffx.17935.1.S1_at--50--1931Chr09:16766215..16766239 (25 bp)
ACGGGTCCCACATTGCCAGAGAAAG
LOC_Os09g27590
OsAffx.17935.1.S1_at--1106--2271Chr09:16766236..16766260 (25 bp)
AAAGGCGTGGCAGAGCCACTACTCA
LOC_Os09g27590
OsAffx.17935.1.S1_at--66--8271Chr09:16766244..16766268 (25 bp)
GGCAGAGCCACTACTCAGCAGCTCA
LOC_Os09g27590
OsAffx.17935.1.S1_at--980--1971Chr09:16766276..16766300 (25 bp)
ACTGCCAGGCGGACCCACAGGTCAG
LOC_Os09g27590
OsAffx.17935.1.S1_at--382--5811Chr09:16766287..16766311 (25 bp)
GACCCACAGGTCAGTGAGGTTAGTG
LOC_Os09g27590
OsAffx.17935.1.S1_at--551--8031Chr09:16766427..16766451 (25 bp)
GGAGTACTGCAGACAGAGCAGCAGC
LOC_Os09g27590
OsAffx.17935.1.S1_at--137--4691Chr09:16766467..16766959 (25 bp)
GCGGAGACGCCGACGCCGGAAAAAT
NONE
Target Sequence 
TCCAACTTCTTCTACGACGACGATGATCTCCTGGGCTCGATTTTCTCGACGGGTCCCACATTGCCAGAGAAAGGCGTGGC
AGAGCCACTACTCAGCAGCTCATCCTCCAACTGCCAGGCGGACCCACAGGTCAGTGAGGTTAGTGGGGCCCAGCCGCAGG
CCACTCCGGCCGCGCCAGCGCGCCGCGCCGGCGGAGGACGCGGCGGCGGAGGCGGAGTACTGCAGACAGAGCAGCAGCAA
GCGGCGAAGGGAGGCGGAGACGCCGACGCCGGAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis