Browse Element(s) Details


Os.6037.2.S1_x_at

Description gb:AK068574.1
DB_XREF= gi:32978591
TID=Os.6037.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155A20, full insert sequence.
FL= gb:AK068574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2758011/11potassium uptake protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein
LOC_Os09g27570Os.52986.1.S1_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27570Os.52986.1.S2_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27590OsAffx.17935.1.S1_at9/119+16764918..16766766expressed protein
LOC_Os09g27599NANA9+16770555..16771000NA
LOC_Os09g27610Os.56297.1.S1_at7/119+16780151..16783470hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6037.2.S1_x_at--27--3291Chr09:16757965..16757989 (25 bp)
CACAATTTTTGTCACCCTGAGGTCC
LOC_Os09g27580
Os.6037.2.S1_x_at--784--3831Chr09:16757990..16758014 (25 bp)
CTGCTCGTCGCCAAAGTTGATCAAA
LOC_Os09g27580
Os.6037.2.S1_x_at--314--4471Chr09:16758138..16758162 (25 bp)
GCCTGCAATGGCACATCCAGATGGA
LOC_Os09g27580
Os.6037.2.S1_x_at--569--1311Chr09:16758156..16758180 (25 bp)
AGATGGACACTGATGGCCGCCGGTC
LOC_Os09g27580
Os.6037.2.S1_x_at--472--5171Chr09:16758243..16758267 (25 bp)
GCAAGATGAGGTTCTACGTCGGCGA
LOC_Os09g27580
Os.6037.2.S1_x_at--261--1831Chr09:16758270..16758294 (25 bp)
ACGCCGGCTGGTTTGATAAGATCAT
LOC_Os09g27580
Os.6037.2.S1_x_at--459--6071Chr09:16758308..16758332 (25 bp)
GAGTTCTTGCATGGGATCTGCCGGT
LOC_Os09g27580
Os.6037.2.S1_x_at--432--10851Chr09:16758348..16758372 (25 bp)
TTGGGATGCCTCTGCAACAGCGAGT
LOC_Os09g27580
Os.6037.2.S1_x_at--271--6411Chr09:16758376..16758400 (25 bp)
GATCGGCATGCTGTACAAGGTCTGA
LOC_Os09g27580
Os.6037.2.S1_x_at--295--5251Chr09:16758418..16758442 (25 bp)
GAATCACTAGTGTTGTCTGTTGCCT
LOC_Os09g27580
Os.6037.2.S1_x_at--1124--7171Chr09:16758432..16758456 (25 bp)
GTCTGTTGCCTTACGATGTTGATCG
LOC_Os09g27580
Target Sequence 
CACAATTTTTGTCACCCTGAGGTCCCTGCTCGTCGCCAAAGTTGATCAAAGCAAAAGGATCCTGATAAACAGGCTTGGAC
CAAACGGGGTGTACGGCTGCACCGTTCAGTACGGCTACGCCGACAACCTCAGCCTCGAGGGCGGCGACGACCTCGCCGCG
CAGGTCACGAGCTGCCTGCAATGGCACATCCAGATGGACACTGATGGCCGCCGGTCACCGGAGGAAGAGATGGCGCAGCT
GGAGGCGGCGAGGTTGGCCGGCGTGGTGCACGTCCGGGGCAAGATGAGGTTCTACGTCGGCGAGGACGCCGGCTGGTTTG
ATAAGATCATGCTCGGATTCTATGAGTTCTTGCATGGGATCTGCCGGTCGGCTCTGCCGGTTCTTGGGATGCCTCTGCAA
CAGCGAGTTGAGATCGGCATGCTGTACAAGGTCTGATGAGCTGTTGATCGATTGAATCACTAGTGTTGTCTGTTGCCTTA
CGATGTTGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6037.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis