Browse Element(s) Details


Os.52986.1.S2_at

Description gb:AK070293.1
DB_XREF= gi:32980317
TID=Os.52986.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050H06, full insert sequence.
FL= gb:AK070628.1 gb:AK070293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2757011/11F-box protein interaction domain containing protein, expressed
LOC_Os02g366901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein
LOC_Os09g27570Os.52986.1.S1_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27570Os.52986.1.S2_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27590OsAffx.17935.1.S1_at9/119+16764918..16766766expressed protein
LOC_Os09g27599NANA9+16770555..16771000NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52986.1.S2_at--815--6073Chr09:16747807..16747831 (25 bp)
GAGTTTCAATCGGTCAGTCACTTGT
LOC_Os09g27570
Os.52986.1.S2_at--811--131Chr09:16747743..16747767 (25 bp)
ATTAAGGTATCTGTTGTTGCTTGCT
LOC_Os09g27570
Os.52986.1.S2_at--103--3913Chr09:16747720..16747744 (25 bp)
CTGGTTCTCGTGCTATTGTTCTCTA
LOC_Os09g27570
Os.52986.1.S2_at--478--52Chr09:16747706..16747730 (25 bp)
ATTGTTCTCTACTGTTTTTGCTGAA
LOC_Os09g27570
Os.52986.1.S2_at--321--9011Chr09:16747685..16747709 (25 bp)
TGAATTCTTCAGCTGGTGCTGCTGT
LOC_Os09g27570
Os.52986.1.S2_at--252--7311Chr09:16747656..16747680 (25 bp)
GTGCTGTTGTCGAGGCCACGATCAG
LOC_Os09g27570
Os.52986.1.S2_at--333--6071Chr09:16747631..16747655 (25 bp)
GAGTTCGTGACCGTGATTTCGCAGA
LOC_Os09g27570
Os.52986.1.S2_at--561--8591Chr09:16747581..16747605 (25 bp)
TGGTGGTTTCGTAGAGGGCCCACTT
LOC_Os09g27570
Os.52986.1.S2_at--971--8611Chr09:16747430..16747454 (25 bp)
TGGTGATGCTCTAATTCCCACGGCA
LOC_Os09g27570
Os.52986.1.S2_at--662--9831Chr09:16747398..16747422 (25 bp)
TAAACGTCGCCGTGCAGTGTGCGGA
LOC_Os09g27570
Os.52986.1.S2_at--1001--591Chr09:16747349..16747373 (25 bp)
ATGCGTATCCAATTCTCGGTTTATT
LOC_Os09g27570
Target Sequence 
GAGTTTCAATCGGTCAGTCACTTGTGATTCTTTTTACAGATTACATTTGTTGCACTTGCTGAAGATTAAGGTATCTGTTG
TTGCTTGCTGGTTCTCGTGCTATTGTTCTCTACTGTTTTTGCTGAATTCTTCAGCTGGTGCTGCTGTTGATGTGCTGTTG
TCGAGGCCACGATCAGGAGTTCGTGACCGTGATTTCGCAGAGGGAGAGACGGAAATAAAATTCAGTTGGTGGTTTCGTAG
AGGGCCCACTTTTAATTTTAGAAAGTCAATTTTAGACAATCTCCTGGAGGGATCAATATTTTAGCACATCAAATTTTGTT
TAGCATTCCCATAAAAATAGTTTTGGGAATGAAATATTGGGATACTCTTGGTGATCTTGGTGATGCTCTAATTCCCACGG
CAGCCAGCCTAAACGTCGCCGTGCAGTGTGCGGACGCGGCCTGTGCCACCTCCGTACCATGCGTATCCAATTCTCGGTTT
ATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52986.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis