Browse Element(s) Details


OsAffx.30060.1.S1_at

Description tigr:9637.m02417
TID=OsAffx.30060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2756011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein
LOC_Os09g27570Os.52986.1.S1_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27570Os.52986.1.S2_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27590OsAffx.17935.1.S1_at9/119+16764918..16766766expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30060.1.S1_at--541--8411Chr09:16743298..16743322 (25 bp)
GGCCAAGTTGTTGAGGCTCGGAAAC
LOC_Os09g27560
OsAffx.30060.1.S1_at--1100--10751Chr09:16743308..16743332 (25 bp)
TTGAGGCTCGGAAACCATCATGTCG
LOC_Os09g27560
OsAffx.30060.1.S1_at--133--5791Chr09:16743347..16743371 (25 bp)
GACGACCTGTTGTCTCCGGATGCGG
LOC_Os09g27560
OsAffx.30060.1.S1_at--3--7831Chr09:16743708..16743732 (25 bp)
GGTCAGAAACGAGGCAGGAGTTCCA
LOC_Os09g27560
OsAffx.30060.1.S1_at--88--9511Chr09:16743768..16743792 (25 bp)
TCTCCGACTTCTTCCGTTTCGTCAG
LOC_Os09g27560
OsAffx.30060.1.S1_at--115--9411Chr09:16743786..16743810 (25 bp)
TCGTCAGCGCGCTTGACCTCAGCAG
LOC_Os09g27560
OsAffx.30060.1.S1_at--641--9151Chr09:16743818..16743842 (25 bp)
TGCGCAGCGACTAGGAACCTCAGTA
LOC_Os09g27560
OsAffx.30060.1.S1_at--179--1191Chr09:16743839..16743863 (25 bp)
AGTAGGTTCTACGATTTCTCGACGG
LOC_Os09g27560
OsAffx.30060.1.S1_at--931--3711Chr09:16743847..16743871 (25 bp)
CTACGATTTCTCGACGGTGTCATTG
LOC_Os09g27560
OsAffx.30060.1.S1_at--460--4731Chr09:16743879..16743903 (25 bp)
GCTGGGCGGCCTACAGCCAGATCTT
LOC_Os09g27560
OsAffx.30060.1.S1_at--17--1291Chr09:16743897..16743921 (25 bp)
AGATCTTCCGGCTTCCACGGTTCAA
LOC_Os09g27560
Target Sequence 
GGCCAAGTTGTTGAGGCTCGGAAACCATCATGTCGCTGCGGCTCGGCACGACGACCTGTTGTCTCCGGATGCGGGGCACG
AAGGAACGAGGCGTTCCAGAAGAAGGACGGCGAAATCTCCTCCCGACGTCATCGAGCCGGGGTCAGAAACGAGGCAGGAG
TTCCAGGAGCTCATCGCCGATTCCGTGGCGGAGACGGGCGTCTCCGACTTCTTCCGTTTCGTCAGCGCGCTTGACCTCAG
CAGCCGCCGCTGCGCAGCGACTAGGAACCTCAGTAGGTTCTACGATTTCTCGACGGTGTCATTGATCGGCGGCTGGGCGG
CCTACAGCCAGATCTTCCGGCTTCCACGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis