Browse Element(s) Details


Os.57391.1.S1_at

Description gb:AK111436.1
DB_XREF= gi:32996645
TID=Os.57391.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A02, full insert sequence.
FL= gb:AK111436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2755010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein
LOC_Os09g27570Os.52986.1.S1_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27570Os.52986.1.S2_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27590OsAffx.17935.1.S1_at9/119+16764918..16766766expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57391.1.S1_at--331--7051Chr09:16741360..16741384 (25 bp)
GTAAAACATTCTTGCATCTGTGGCC
LOC_Os09g27550
Os.57391.1.S1_at--114--2971Chr09:16741316..16741340 (25 bp)
AATGGTTCTCTCCATGGGAACCCCT
LOC_Os09g27550
Os.57391.1.S1_at--159--3171NONE
AATTGCTCCAACACAAGTATACTAG
NONE
Os.57391.1.S1_at--671--5191Chr09:16741116..16741140 (25 bp)
GCAATAGGACTCGTATGCAACATTA
LOC_Os09g27550
Os.57391.1.S1_at--1022--5131Chr09:16741100..16741124 (25 bp)
GCAACATTATTTGTACTAGGCACTA
LOC_Os09g27550
Os.57391.1.S1_at--141--3711Chr09:16741085..16741109 (25 bp)
CTAGGCACTAGGACTGAGATGGCAT
LOC_Os09g27550
Os.57391.1.S1_at--413--832Chr01:22934746..22935044 (25 bp)
ATGGATATTATCTCGTGCATTTTTT
NONE
Os.57391.1.S1_at--1080--2331Chr09:16741024..16741048 (25 bp)
AAAGAAGCTTCCGTTATGTTAAATG
LOC_Os09g27550
Os.57391.1.S1_at--326--5971Chr09:16740987..16741011 (25 bp)
GAGAAGTCACTGTATGTCTGTATAA
LOC_Os09g27550
Os.57391.1.S1_at--931--6891Chr09:16740968..16740992 (25 bp)
GTATAATACTGAAACTCCTGCGCAA
LOC_Os09g27550
Os.57391.1.S1_at--781--1971Chr09:16740961..16740985 (25 bp)
ACTGAAACTCCTGCGCAAAGTTGTG
LOC_Os09g27550
Target Sequence 
GTAAAACATTCTTGCATCTGTGGCCATCAGGGGGGCACTTCTCGAATGGTTCTCTCCATGGGAACCCCTTCCAATTGCTC
CAACACAAGTATACTAGCGTCATTCTCTGCAACTGCAACTGCAATAGGACTCGTATGCAACATTATTTGTACTAGGCACT
AGGACTGAGATGGCATAATGGATATTATCTCGTGCATTTTTTTTGTTTTTCTAAAGAAGCTTCCGTTATGTTAAATGTTC
ACACAAATTGAGAAGTCACTGTATGTCTGTATAATACTGAAACTCCTGCGCAAAGTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis