Browse Element(s) Details


Os.56297.1.S1_at

Description gb:AK109793.1
DB_XREF= gi:32995002
TID=Os.56297.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D12, full insert sequence.
FL= gb:AK109793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g276107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27590OsAffx.17935.1.S1_at9/119+16764918..16766766expressed protein
LOC_Os09g27599NANA9+16770555..16771000NA
LOC_Os09g27610Os.56297.1.S1_at7/119+16780151..16783470hypothetical protein
LOC_Os09g27620OsAffx.17936.1.S1_s_at11/119+16785040..16787398PHD-finger family protein, expressed
LOC_Os09g27630OsAffx.30061.2.S1_at8/119+16791513..16794853hypothetical protein
LOC_Os09g27630OsAffx.30061.3.S1_at2/119+16791513..16794853hypothetical protein
LOC_Os09g27630Os.9329.1.S1_at1/119+16791513..16794853hypothetical protein
LOC_Os09g27640NANA9+16798951..16800494hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56297.1.S1_at--358--7431Chr09:16782810..16782834 (25 bp)
GTGTCATGACGTTTCTTGGACCAAT
LOC_Os09g27610
Os.56297.1.S1_at--184--8151Chr09:16783177..16783201 (25 bp)
GGACACTCTTGGCTGACATTGTGAT
LOC_Os09g27610
Os.56297.1.S1_at--207--2991Chr09:16783205..16783229 (25 bp)
AATGCTTGGGACAGACTATGCTAGA
LOC_Os09g27610
Os.56297.1.S1_at--869--3691Chr09:16783244..16783347 (25 bp)
CTATGCTTTTGCTCAGATTCGGCTG
LOC_Os09g27610
Os.56297.1.S1_at--241--111Chr09:16783339..16783363 (25 bp)
ATTCGGCTGACTAGGACATCTTACA
LOC_Os09g27610
Os.56297.1.S1_at--370--7631Chr09:16783392..16783416 (25 bp)
GGGACATTTCTGGTCTGGACTAACA
LOC_Os09g27610
Os.56297.1.S1_at--1111--91Chr09:16783421..16783445 (25 bp)
ATTCTGGGCCCATAGTGTACATTCT
LOC_Os09g27610
Os.56297.1.S1_at--356--10831Chr09:16783463..16783487 (25 bp)
TTGGTTGAGTGCTGGCGCAATTCTC
NONE
Os.56297.1.S1_at--1109--5191Chr09:16783479..16783503 (25 bp)
GCAATTCTCCCAAGAGGACTCGAGG
NONE
Os.56297.1.S1_at--1087--10531Chr09:16783635..16783659 (25 bp)
TTCTCCAAGGTTTAAGGCTGCTGCT
NONE
Os.56297.1.S1_at--161--2231Chr09:16783743..16783767 (25 bp)
ACAATGACCATTAGGGCCACCTACT
NONE
Target Sequence 
GTGTCATGACGTTTCTTGGACCAATAATGTGGGGGACACTCTTGGCTGACATTGTGATCCAAATGCTTGGGACAGACTAT
GCTAGAATTGTGCAGGCAATCTATGCTTTTGCTCAGATTCGGCTGACTAGGACATCTTACATAGAATCTCATGAAGAATA
ATCAACAGTGGGACATTTCTGGTCTGGACTAACAGGGCATTCTGGGCCCATAGTGTACATTCTGATCATGCAGAACATTT
TTGGTTGAGTGCTGGCGCAATTCTCCCAAGAGGACTCGAGGACAGTAAGTTCATACTTTCACAGAAGTTGTGCAGCTGAT
GTAAATGCATAGAAGTTAGATGACAGAACAATTGATAGATGCTAGGTAGGATAGATGGTACAGATGACACACAAATCATC
TATGCTTTTGAATTCTCCAAGGTTTAAGGCTGCTGCTTAAGTGAGAGCTTGTTATACATTCCAGGAAAAATTAATTTACT
GCCACTATAGAATGGTGTAATTGTATTTAAGAAATAGCTCACAATGACCATTAGGGCCACCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis