Browse Element(s) Details


OsAffx.2855.1.S1_at

Description tigr:9630.m03258
TID=OsAffx.2855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3425011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34210OsAffx.16467.1.S1_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.2.S1_s_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.6.S1_s_at8/112+20460825..20462776hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_x_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34240OsAffx.12345.1.S1_at9/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34240OsAffx.9423.1.S1_x_at1/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34250OsAffx.2855.1.S1_at11/112+20483394..20484110expressed protein
LOC_Os02g34260Os.55316.1.S1_at5/112+20485245..20486000AP2 domain containing protein
LOC_Os02g34270Os.55316.1.S1_at1/112+20493260..20494008AP2 domain containing protein, expressed
LOC_Os02g34280OsAffx.28601.3.S1_x_at9/112+20502686..20503880hypothetical protein
LOC_Os02g34280OsAffx.28601.3.S1_at7/112+20502686..20503880hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2855.1.S1_at--608--6671Chr02:20483887..20483911 (25 bp)
GTTGCTCCCGGCTAGCGAACGGATG
LOC_Os02g34250
OsAffx.2855.1.S1_at--1160--4091Chr02:20483872..20483896 (25 bp)
CGAACGGATGCTCACGTACGTACGT
LOC_Os02g34250
OsAffx.2855.1.S1_at--895--9931Chr02:20483856..20483880 (25 bp)
TACGTACGTGGCTAGCTGCTGTGTC
LOC_Os02g34250
OsAffx.2855.1.S1_at--1084--1591Chr02:20483843..20483867 (25 bp)
AGCTGCTGTGTCGTCTACCGATGTT
LOC_Os02g34250
OsAffx.2855.1.S1_at--131--9971Chr02:20483828..20483852 (25 bp)
TACCGATGTTTTACGTGTACAGTGC
LOC_Os02g34250
OsAffx.2855.1.S1_at--689--7011Chr02:20483812..20483836 (25 bp)
GTACAGTGCGAGGTAGTCACGCCCG
LOC_Os02g34250
OsAffx.2855.1.S1_at--968--5011Chr02:20483617..20483641 (25 bp)
GCAGGGTCACGTATTCACGTGTCGT
LOC_Os02g34250
OsAffx.2855.1.S1_at--570--871Chr02:20483564..20483588 (25 bp)
ATGGCGCGGAAGATCTCGGTTCGTC
LOC_Os02g34250
OsAffx.2855.1.S1_at--303--2471Chr02:20483527..20483551 (25 bp)
AACACGGTGTCTTGGTGGGTTCTTG
LOC_Os02g34250
OsAffx.2855.1.S1_at--348--8951Chr02:20483449..20483473 (25 bp)
TGACTCCTCTGCTTCGTGGGAGCCA
LOC_Os02g34250
OsAffx.2855.1.S1_at--571--811Chr02:20483425..20483449 (25 bp)
ATGGGTGCAACGGAAGTACGGAACA
LOC_Os02g34250
Target Sequence 
GTTGCTCCCGGCTAGCGAACGGATGCTCACGTACGTACGTGGCTAGCTGCTGTGTCGTCTACCGATGTTTTACGTGTACA
GTGCGAGGTAGTCACGCCCGGCGAAGCAAGCGAGGGATCAGTGGTGGCGCCGGATGCGGCGGCGGCGGCGGAGCGCGGGG
TCAGGTGACGGCTGTGGGGGCAAGTGGGGCGGCGGCCGAGGACGCGCGCGGCTACGACGCCGCCGCGCTCAGCTTCCCGG
AGGAGGCGTCTCGCCCGCGCGCCCCCCGTGGCAGGGTCACGTATTCACGTGTCGTGCTCGCCGTCGATCGATCGCGCACC
GGGATGGCGCGGAAGATCTCGGTTCGTCGTCGCCGGCGCGAACACGGTGTCTTGGTGGGTTCTTGGACCTCCACCTCCGC
CGCCGTCGCCGTCCGCGACGCGCCTGGCCGCGCGCGGCTGACTCCTCTGCTTCGTGGGAGCCATGGGTGCAACGGAAGTA
CGGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis