Browse Element(s) Details


OsAffx.12345.1.S1_at

Description tigr:9630.m03257
TID=OsAffx.12345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g342409/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34190Os.9329.1.S1_at11/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.3.S1_at9/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.2.S1_at1/112+20444676..20448737hypothetical protein
LOC_Os02g34200Os.26886.1.S1_x_at8/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200Os.26886.3.S1_x_at4/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200OsAffx.16244.1.S1_x_at1/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34210OsAffx.16467.1.S1_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.2.S1_s_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.6.S1_s_at8/112+20460825..20462776hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_x_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34240OsAffx.12345.1.S1_at9/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34240OsAffx.9423.1.S1_x_at1/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34250OsAffx.2855.1.S1_at11/112+20483394..20484110expressed protein
LOC_Os02g34260Os.55316.1.S1_at5/112+20485245..20486000AP2 domain containing protein
LOC_Os02g34270Os.55316.1.S1_at1/112+20493260..20494008AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12345.1.S1_at--57--4611NONE
GCGACTGGCCGCTGTGTGATATTTG
NONE
OsAffx.12345.1.S1_at--260--1951NONE
ACTGGCCGCTGTGTGATATTTGTCC
NONE
OsAffx.12345.1.S1_at--490--7471Chr02:20469291..20469315 (25 bp)
GTGTGATATTTGTCCGGCAGCAAGA
LOC_Os02g34240
OsAffx.12345.1.S1_at--710--5951Chr02:20469266..20469290 (25 bp)
GAGCAAGTATGCAACGAAATCTAGT
LOC_Os02g34240
OsAffx.12345.1.S1_at--249--2271Chr02:20469250..20469274 (25 bp)
AAATCTAGTGATTTAAGCACCCGAT
LOC_Os02g34240
OsAffx.12345.1.S1_at--268--7411Chr02:20469243..20469267 (25 bp)
GTGATTTAAGCACCCGATACCTTCC
LOC_Os02g34240
OsAffx.12345.1.S1_at--751--6471Chr02:20469228..20469252 (25 bp)
GATACCTTCCATTCGTACTATTCAT
LOC_Os02g34240
OsAffx.12345.1.S1_at--838--7011Chr02:20469214..20469238 (25 bp)
GTACTATTCATATACGTCGCCATTG
LOC_Os02g34240
OsAffx.12345.1.S1_at--35--251Chr02:20469205..20469229 (25 bp)
ATATACGTCGCCATTGTGCTGGACT
LOC_Os02g34240
OsAffx.12345.1.S1_at--228--7231Chr02:20469199..20469223 (25 bp)
GTCGCCATTGTGCTGGACTTCAAAG
LOC_Os02g34240
OsAffx.12345.1.S1_at--1102--4431Chr02:20469196..20469220 (25 bp)
GCCATTGTGCTGGACTTCAAAGAGA
LOC_Os02g34240
Target Sequence 
GCGACTGGCCGCTGTGTGATATTTGTCCGGCAGCAAGAGAGCAAGTATGCAACGAAATCTAGTGATTTAAGCACCCGATA
CCTTCCATTCGTACTATTCATATACGTCGCCATTGTGCTGGACTTCAAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis