Browse Element(s) Details


OsAffx.27328.1.S1_at

Description tigr:9633.m04281
TID=OsAffx.27328.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4567011/11hypothetical protein
LOC_Os02g555301/11Neurochondrin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45620NANA5+26354997..26359658retrotransposon protein, putative, unclassified
LOC_Os05g45630OsAffx.22947.1.S1_x_at8/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.2.S1_x_at7/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.3.S1_x_at6/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_x_at4/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_at2/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45640NANA5+26370048..26372649retrotransposon protein, putative, unclassified
LOC_Os05g45650Os.28943.1.S1_x_at1/115+26373275..26376489retrotransposon protein, putative, unclassified
LOC_Os05g45660Os.6808.1.S1_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660OsAffx.15114.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660Os.6808.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45670OsAffx.27328.1.S1_at11/115+26384268..26385706hypothetical protein
LOC_Os05g45680OsAffx.17941.1.A1_s_at1/115+26386778..26387935retrotransposon protein, putative, unclassified
LOC_Os05g45690Os.55202.1.S1_at9/115+26388945..26390509expressed protein
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27328.1.S1_at--901--5651Chr05:26384951..26384975 (25 bp)
GACAGTGGCCACTTTCAGAGACAGA
LOC_Os05g45670
OsAffx.27328.1.S1_at--20--8771Chr05:26384826..26384850 (25 bp)
TGTATTACTCCTCCGAAAACCGCAT
LOC_Os05g45670
OsAffx.27328.1.S1_at--726--5352Chr02:33999360..33999445 (25 bp)
GAAGATCTCTATTTTGTGCTCATGT
LOC_Os02g55530
OsAffx.27328.1.S1_at--625--10252Chr05:26384608..26384632 (25 bp)
TTTGTGCTCATGTTGTTGGTGCCTT
LOC_Os05g45670
OsAffx.27328.1.S1_at--44--4851Chr05:26384583..26384607 (25 bp)
GCTAAGGGTTCATCTTGACGCCCAT
LOC_Os05g45670
OsAffx.27328.1.S1_at--434--10611Chr05:26384558..26384582 (25 bp)
TTCTGGCGCAGGGTTCTTGAAGGCA
LOC_Os05g45670
OsAffx.27328.1.S1_at--948--10851Chr05:26384504..26384528 (25 bp)
TTGGCAAGCGAATACCCTCATGATC
LOC_Os05g45670
OsAffx.27328.1.S1_at--756--2731Chr05:26384468..26384492 (25 bp)
AAGAACCATCCTCGATACGCTTGGA
LOC_Os05g45670
OsAffx.27328.1.S1_at--377--3291Chr05:26384431..26384455 (25 bp)
CAAAGCCTATCAAATCCCTTCTAAT
LOC_Os05g45670
OsAffx.27328.1.S1_at--594--531Chr05:26384418..26384442 (25 bp)
ATCCCTTCTAATCTACGACAGTTAC
LOC_Os05g45670
OsAffx.27328.1.S1_at--68--6511Chr05:26384309..26384333 (25 bp)
GATATCTTGCTCTGGAAATCTCAAA
LOC_Os05g45670
Target Sequence 
GACAGTGGCCACTTTCAGAGACAGATGCGATGTGGATGAAGATACATGGAAGGAGCTGTATTACTCCTCCGAAAACCGCA
TTCCCCGTGGAAGCAAGATCATAATCACAAGCCGATCAGAGGTGTTTGTGTTTGGAAGTGCAGATCCTGATGAGCATCCA
AAGTTGACATCAATAGCTATGGAGATTGCAGCAGAGCTGAGAAGATCTCTATTTTGTGCTCATGTTGTTGGTGCCTTGCT
AAGGGTTCATCTTGACGCCCATTTCTGGCGCAGGGTTCTTGAAGGCACCAGAGAGTACATGCAGAAGAATCTTATCTTGG
CAAGCGAATACCCTCATGATCTGAAGACGGACAAGAACCATCCTCGATACGCTTGGATAATTAGTGAACCAAAGCCTATC
AAATCCCTTCTAATCTACGACAGTTACCAGAAAGGTTCTGAAAACGCTGAGGTTCCAAATATTACAATTCAGGATCTGCT
GTTTGGAGAAGCTTCAGGTCGGGGGAAATTTGATATCTTGCTCTGGAAATCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis