Browse Element(s) Details


Os.48286.1.A1_at

Description gb:CR280415
DB_XREF= gi:44666981
DB_XREF=CR280415
CLONE=p761h03p3
TID=Os.48286.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48286 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200487.1 (A.thaliana) S71207) (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4571011/11serine O-acetyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45640NANA5+26370048..26372649retrotransposon protein, putative, unclassified
LOC_Os05g45650Os.28943.1.S1_x_at1/115+26373275..26376489retrotransposon protein, putative, unclassified
LOC_Os05g45660Os.6808.1.S1_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660OsAffx.15114.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660Os.6808.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45670OsAffx.27328.1.S1_at11/115+26384268..26385706hypothetical protein
LOC_Os05g45680OsAffx.17941.1.A1_s_at1/115+26386778..26387935retrotransposon protein, putative, unclassified
LOC_Os05g45690Os.55202.1.S1_at9/115+26388945..26390509expressed protein
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os05g45760OsAffx.4628.1.S1_s_at11/115+26421209..26423364pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0009970biological_processcellular response to sulfate starvation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0009001molecular_functionserine O-acetyltransferase activity
GO:0016407molecular_functionacetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48286.1.A1_at--1026--2011Chr05:26397113..26397137 (25 bp)
ACTACACCATTTGAGGGCGACGCGC
LOC_Os05g45710
Os.48286.1.A1_at--1139--5791Chr05:26397095..26397119 (25 bp)
GACGCGCCGAGGTCTATTTCTCTTC
LOC_Os05g45710
Os.48286.1.A1_at--724--9571Chr05:26397075..26397099 (25 bp)
TCTTCCTCTCTGTATAATCCGTAGT
LOC_Os05g45710
Os.48286.1.A1_at--156--3051Chr05:26397060..26397084 (25 bp)
AATCCGTAGTGTTGATATGCCAAAA
LOC_Os05g45710
Os.48286.1.A1_at--233--2431Chr05:26397038..26397062 (25 bp)
AAAACTGATGTACTTGTCGTGCTTT
LOC_Os05g45710
Os.48286.1.A1_at--1015--3611Chr05:26397026..26397050 (25 bp)
CTTGTCGTGCTTTGGGTAATCTGTA
LOC_Os05g45710
Os.48286.1.A1_at--338--7071Chr05:26397011..26397035 (25 bp)
GTAATCTGTACTGTAGTGTTGTATC
LOC_Os05g45710
Os.48286.1.A1_at--688--7411Chr05:26396996..26397020 (25 bp)
GTGTTGTATCATCAGCCGTTTTATC
LOC_Os05g45710
Os.48286.1.A1_at--281--1651Chr05:26396983..26397007 (25 bp)
AGCCGTTTTATCAGTCGAATGCCCA
LOC_Os05g45710
Os.48286.1.A1_at--1085--10411Chr05:26396976..26397000 (25 bp)
TTATCAGTCGAATGCCCATGCTCAT
LOC_Os05g45710
Os.48286.1.A1_at--1039--4531Chr05:26396963..26396987 (25 bp)
GCCCATGCTCATGTACTGATAACTG
LOC_Os05g45710
Target Sequence 
ACTACACCATTTGAGGGCGACGCGCCGAGGTCTATTTCTCTTCCTCTCTGTATAATCCGTAGTGTTGATATGCCAAAAAC
TGATGTACTTGTCGTGCTTTGGGTAATCTGTACTGTAGTGTTGTATCATCAGCCGTTTTATCAGTCGAATGCCCATGCTC
ATGTACTGATAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48286.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis