Browse Element(s) Details


OsAffx.4628.1.S1_s_at

Description tigr:9633.m04291
TID=OsAffx.4628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4576011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os05g45760OsAffx.4628.1.S1_s_at11/115+26421209..26423364pentatricopeptide, putative, expressed
LOC_Os05g45770OsAffx.15117.1.S1_at10/115+26424397..26426626Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein
LOC_Os05g45790NANA5+26440552..26443857retrotransposon protein, putative, unclassified
LOC_Os05g45800Os.56089.1.S1_at1/115+26444472..26450624retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4628.1.S1_s_at--230--2931Chr05:26421630..26421654 (25 bp)
AAGGACGAGGCTGCAGCTAGAGCTA
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--746--5911Chr05:26421611..26421635 (25 bp)
GAGCTAGTGCCGCTGCCATTGAAGC
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--986--3571Chr05:26421595..26421619 (25 bp)
CATTGAAGCCATCCTTGGCCATAAA
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--745--9031Chr05:26421541..26421565 (25 bp)
TGCACCTGATGCAAACTCACTGGAT
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--1146--2531Chr05:26421528..26421552 (25 bp)
AACTCACTGGATGGTGTGTTTCAGA
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--41--7871Chr05:26421500..26421524 (25 bp)
GGTTTGGAATCACATCAGCTGGAGA
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--1081--4891Chr05:26421469..26421493 (25 bp)
GCTTCAAGGCACTTCTTCAGGAGGT
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--96--8151Chr05:26421426..26421450 (25 bp)
GGACACTAACATTTGATGACCACAG
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--339--8671Chr05:26421380..26421404 (25 bp)
TGTGGATCTGATAACCCCGTCATTT
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--591--2611Chr05:26421368..26421392 (25 bp)
AACCCCGTCATTTTATATCGATTCT
LOC_Os05g45760
OsAffx.4628.1.S1_s_at--553--1931Chr05:26421273..26421297 (25 bp)
ACGGCAGTAACTCTGGTTGAGTCTT
LOC_Os05g45760
Target Sequence 
AAGGACGAGGCTGCAGCTAGAGCTAGTGCCGCTGCCATTGAAGCCATCCTTGGCCATAAAAGGAAGACTGAAAATGTAAC
AGGAGAACCTGCACCTGATGCAAACTCACTGGATGGTGTGTTTCAGAGTAGGTTTGGAATCACATCAGCTGGAGATGGTG
CGCTTCAAGGCACTTCTTCAGGAGGTGAAACTAAACAAGGAGATGGACACTAACATTTGATGACCACAGGAAATCATGTC
TTAGTCTGCCTGTGGATCTGATAACCCCGTCATTTTATATCGATTCTAAGAGCATCGATCAGTAAATTGAAATTCTCAGA
AGCCTGAAGATTTCAACATTTGGTGTCAAATGAGTAAACGGCAGTAACTCTGGTTGAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4628.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis