Browse Element(s) Details


OsAffx.15116.1.S1_at

Description tigr:9633.m04289
TID=OsAffx.15116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitochondrial ATP synthase g subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4574011/11mitochondrial ATP synthase g subunit family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45690Os.55202.1.S1_at9/115+26388945..26390509expressed protein
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os05g45760OsAffx.4628.1.S1_s_at11/115+26421209..26423364pentatricopeptide, putative, expressed
LOC_Os05g45770OsAffx.15117.1.S1_at10/115+26424397..26426626Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein
LOC_Os05g45790NANA5+26440552..26443857retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15116.1.S1_at--191--7791Chr05:26414727..26414751 (25 bp)
GGTGCGCGTACCACAGGGCGCTCAT
LOC_Os05g45740
OsAffx.15116.1.S1_at--76--1691Chr05:26415955..26415979 (25 bp)
AGCCTTCCTGGTCGCTATGAGGCAT
LOC_Os05g45740
OsAffx.15116.1.S1_at--126--3911Chr05:26415962..26415986 (25 bp)
CTGGTCGCTATGAGGCATTCTGGAA
LOC_Os05g45740
OsAffx.15116.1.S1_at--970--8271Chr05:26415975..26415999 (25 bp)
GGCATTCTGGAAGGAAGCGGATCAA
LOC_Os05g45740
OsAffx.15116.1.S1_at--514--5571Chr05:26416022..26416046 (25 bp)
GAAAGGATCTGAACGTTGAGCATGC
LOC_Os05g45740
OsAffx.15116.1.S1_at--859--5451Chr05:26416032..26416056 (25 bp)
GAACGTTGAGCATGCTGGCGTTGCT
LOC_Os05g45740
OsAffx.15116.1.S1_at--292--5931Chr05:26416039..26416063 (25 bp)
GAGCATGCTGGCGTTGCTGCACTTT
LOC_Os05g45740
OsAffx.15116.1.S1_at--1077--6671Chr05:26416051..26416075 (25 bp)
GTTGCTGCACTTTTTGGCATTGAGT
LOC_Os05g45740
OsAffx.15116.1.S1_at--352--8291Chr05:26416066..26416090 (25 bp)
GGCATTGAGTTGTACGCGTGGTTCT
LOC_Os05g45740
OsAffx.15116.1.S1_at--1016--8891Chr05:26416071..26416095 (25 bp)
TGAGTTGTACGCGTGGTTCTGCGTT
LOC_Os05g45740
OsAffx.15116.1.S1_at--624--10591Chr05:26416087..26416111 (25 bp)
TTCTGCGTTGGTGAGATCGTTGGTA
LOC_Os05g45740
Target Sequence 
GGTGCGCGTACCACAGGGCGCTCATGGAGAAGAACCAGAAGTACGTCGCCGACCCGCCCACCATCGAGAGGTGCCAGGAG
CTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGCCTTCCTGGTCGCTATGAGGCATTCTGGAAGGAAGCGGATCAAGT
GAAGAACTTGTGGAGAAACAGAAAGGATCTGAACGTTGAGCATGCTGGCGTTGCTGCACTTTTTGGCATTGAGTTGTACG
CGTGGTTCTGCGTTGGTGAGATCGTTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis