Browse Element(s) Details


OsAffx.15117.1.S1_at

Description tigr:9633.m04292
TID=OsAffx.15117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4577010/11Uncharacterized BCR, COG1963 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os05g45760OsAffx.4628.1.S1_s_at11/115+26421209..26423364pentatricopeptide, putative, expressed
LOC_Os05g45770OsAffx.15117.1.S1_at10/115+26424397..26426626Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein
LOC_Os05g45790NANA5+26440552..26443857retrotransposon protein, putative, unclassified
LOC_Os05g45800Os.56089.1.S1_at1/115+26444472..26450624retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15117.1.S1_at--422--10071Chr05:26424689..26424713 (25 bp)
TAGGGACGCTGCTGATGAGCACGAC
LOC_Os05g45770
OsAffx.15117.1.S1_at--288--7651Chr05:26424737..26424761 (25 bp)
GGGAGAACCCGTACATCCTGGCGCT
LOC_Os05g45770
OsAffx.15117.1.S1_at--680--4691Chr05:26424763..26424787 (25 bp)
GCGGCGAACCCAACGTTCGTGTCGG
LOC_Os05g45770
OsAffx.15117.1.S1_at--92--2891Chr05:26424820..26424844 (25 bp)
AAGGTCGTGCTCACCTCGTTCGTGG
LOC_Os05g45770
OsAffx.15117.1.S1_at--349--3751Chr05:26424829..26424853 (25 bp)
CTCACCTCGTTCGTGGAGCGGCGGT
LOC_Os05g45770
OsAffx.15117.1.S1_at--795--7171Chr05:26424970..26424994 (25 bp)
GTCTGCCTCGGGTTCACATTGATAG
LOC_Os05g45770
OsAffx.15117.1.S1_at--820--7631NONE
GGGATGCAGGCCGAGGTACTCAATA
NONE
OsAffx.15117.1.S1_at--164--3091Chr05:26426470..26426494 (25 bp)
AATAAGATCGTTGAGGACCTGTTTC
LOC_Os05g45770
OsAffx.15117.1.S1_at--750--6171Chr05:26426482..26426506 (25 bp)
GAGGACCTGTTTCAAGGCCATCCAA
LOC_Os05g45770
OsAffx.15117.1.S1_at--437--3211Chr05:26426494..26426518 (25 bp)
CAAGGCCATCCAATTAGTGAAAGAA
LOC_Os05g45770
OsAffx.15117.1.S1_at--415--6631Chr05:26426529..26426553 (25 bp)
GTTGTTAGGGCATACTCCATCACAG
LOC_Os05g45770
Target Sequence 
TAGGGACGCTGCTGATGAGCACGACGGCGGCGGCGGTGACCAAGGCGCGGGAGAACCCGTACATCCTGGCGCTCGCGGCG
AACCCAACGTTCGTGTCGGGGCTCGTGGCGTGGGCGGTGGCGCAGGCGGCCAAGGTCGTGCTCACCTCGTTCGTGGAGCG
GCGGTGGGACCTGCGGATGCTGTTCAGCTCCGGCGGGATGCCGTCGTCGCACACGGCGCTCTGCACCGCGCTCACCGCCT
CCGTCGCGCTCTGCCACGGCGTCAGCGACTCGCTCTTCCCTGTCTGCCTCGGGTTCACATTGATAGTCATGTATGACGCC
ACGGGCGTCAGGCGCCACGCGGGGATGCAGGCCGAGGTACTCAATAAGATCGTTGAGGACCTGTTTCAAGGCCATCCAAT
TAGTGAAAGAAAACTGAAAGAGTTGTTAGGGCATACTCCATCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis