Browse Element(s) Details


OsAffx.27330.1.S1_s_at

Description tigr:9633.m04288
TID=OsAffx.27330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH dehydrogenase subunit 10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4573011/11NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os12g117201/11Leucine Rich Repeat family protein
LOC_Os12g121201/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45680OsAffx.17941.1.A1_s_at1/115+26386778..26387935retrotransposon protein, putative, unclassified
LOC_Os05g45690Os.55202.1.S1_at9/115+26388945..26390509expressed protein
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os05g45760OsAffx.4628.1.S1_s_at11/115+26421209..26423364pentatricopeptide, putative, expressed
LOC_Os05g45770OsAffx.15117.1.S1_at10/115+26424397..26426626Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0005515molecular_functionprotein binding
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27330.1.S1_s_at--471--611Chr05:26413434..26413458 (25 bp)
ATGCGACAGGATTGTTCCCGTGGAC
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--579--8991Chr05:26413488..26413512 (25 bp)
TGAAGCTCTACTGTATGGCGTCCTG
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--1083--2851Chr05:26413564..26413588 (25 bp)
AAGTGAACCAGCACTTCTCTGCTTT
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--1033--9471Chr05:26413581..26413605 (25 bp)
TCTGCTTTCCTATCTGCTACGAATA
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--215--4851Chr05:26413596..26413620 (25 bp)
GCTACGAATACGATCCTGTCAAAAT
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--783--2291Chr05:26413617..26413641 (25 bp)
AAATGTTATCGAGCTTCTGTGTTAA
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--13--2371Chr05:26413649..26413673 (25 bp)
AAAGCGTGTGCTTTCCGATCATCAA
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--1140--10291Chr05:26413660..26413684 (25 bp)
TTTCCGATCATCAAACTCTCTGTAG
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--87--3453Chr12:6647027..6647084 (24 bp)
CAGTGATAGTGAGCTCCTGGCTACC
LOC_Os12g12120
OsAffx.27330.1.S1_s_at--140--8311Chr05:26413709..26413733 (25 bp)
GGCTACCTTGATCACCGTTCATGGA
LOC_Os05g45730
OsAffx.27330.1.S1_s_at--84--6691Chr05:26413756..26413780 (25 bp)
GTTGCGGTGTTGCTGCTTTAATACT
LOC_Os05g45730
Target Sequence 
ATGCGACAGGATTGTTCCCGTGGACATCTACGTCCCTGGATGCCCTCCAACTGCTGAAGCTCTACTGTATGGCGTCCTGC
AGTTGCAGAAGAAGATCAACAGGCGCAGGGATTTCCTTCACTGGTGGAACAAGTGAACCAGCACTTCTCTGCTTTCCTAT
CTGCTACGAATACGATCCTGTCAAAATGTTATCGAGCTTCTGTGTTAAATAAAGGAAAGCGTGTGCTTTCCGATCATCAA
ACTCTCTGTAGTAGATGCAGTGATAGTGAGCTCCTGGCTACCTTGATCACCGTTCATGGACAAAAAAACAATTGGTGATG
CTGTTGCGGTGTTGCTGCTTTAATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27330.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis