Browse Element(s) Details


Os.11849.1.S1_at

Description gb:AY373258.1
DB_XREF= gi:34809051
TID=Os.11849.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11849 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) starch synthase IVb precursor, mRNA, complete cds.
PROD=starch synthase IVb precursor
FL= gb:AY373258.1 gb:AK067577.1 gb:AY224560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4572010/11glycogen/starch synthases, ADP-glucose type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45660Os.6808.1.S1_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660OsAffx.15114.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660Os.6808.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45670OsAffx.27328.1.S1_at11/115+26384268..26385706hypothetical protein
LOC_Os05g45680OsAffx.17941.1.A1_s_at1/115+26386778..26387935retrotransposon protein, putative, unclassified
LOC_Os05g45690Os.55202.1.S1_at9/115+26388945..26390509expressed protein
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os05g45760OsAffx.4628.1.S1_s_at11/115+26421209..26423364pentatricopeptide, putative, expressed
LOC_Os05g45770OsAffx.15117.1.S1_at10/115+26424397..26426626Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11849.1.S1_at--679--671NONE
ATGACAGTGTCTTCGATTTCGACGA
NONE
Os.11849.1.S1_at--922--851Chr05:26409997..26410021 (25 bp)
ATGGCTTTACGTTTGTGCATCCTGA
LOC_Os05g45720
Os.11849.1.S1_at--1085--6471Chr05:26410186..26410210 (25 bp)
GATAGATTTCAGCTGGGCCTCTTCA
LOC_Os05g45720
Os.11849.1.S1_at--1059--5451Chr05:26410269..26410293 (25 bp)
GAACTCTGGCGGTTTAGTGAGACCT
LOC_Os05g45720
Os.11849.1.S1_at--462--10071Chr05:26410283..26410307 (25 bp)
TAGTGAGACCTGAGCCTTTCTCTGA
LOC_Os05g45720
Os.11849.1.S1_at--185--8251Chr05:26410327..26410351 (25 bp)
GGCACAGATTCTGCCTTCTGAAGAA
LOC_Os05g45720
Os.11849.1.S1_at--1082--771Chr05:26410373..26410397 (25 bp)
ATGTGCGAACATGGCTTCATCTGCA
LOC_Os05g45720
Os.11849.1.S1_at--531--3551Chr05:26410390..26410414 (25 bp)
CATCTGCAGCTTCGATTCTTGGAAT
LOC_Os05g45720
Os.11849.1.S1_at--193--2671Chr05:26410460..26410484 (25 bp)
AAGCCGAGATGTTCCATAGTGCAGT
LOC_Os05g45720
Os.11849.1.S1_at--221--2451Chr05:26410505..26410529 (25 bp)
AAAATCTTGGCACCCATTGTCGTGT
LOC_Os05g45720
Os.11849.1.S1_at--854--31Chr05:26410520..26410544 (25 bp)
ATTGTCGTGTCCCAGTGACAGTGTG
LOC_Os05g45720
Target Sequence 
ATGACAGTGTCTTCGATTTCGACGACGAAACGATACCTAAGGAGCTGCGGAATGGCTTTACGTTTGTGCATCCTGATGAA
AAGGCTCTAAGTGGTGCAATGGAGAGAGCGTTCAACTACTACAATAGAAAGCCTGAGGTCTGGAAACAGCTGGTGCAGAA
GGACATGAGGATAGATTTCAGCTGGGCCTCTTCAGCTTCCCAGTACGAAGATATCTATCAAAGAGCAGTGGCTCGAGCGA
GGGCAGCAGCATGAACTCTGGCGGTTTAGTGAGACCTGAGCCTTTCTCTGACGCGGCGCTTGATGCCACAGGCACAGATT
CTGCCTTCTGAAGAAGCCGCACCATGCACCTCTCTGATGTGCGAACATGGCTTCATCTGCAGCTTCGATTCTTGGAATGG
AACCCAAGATATTTNAAGACATGATCCGTCAGACTCATGCAGGAAGCCGAGATGTTCCATAGTGCAGTTATGGAATGGTC
GAAGAACTAAAATCTTGGCACCCATTGTCGTGTCCCAGTGACAGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis