Browse Element(s) Details


Os.55202.1.S1_at

Description gb:AK107660.1
DB_XREF= gi:32992869
TID=Os.55202.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-G09, full insert sequence.
FL= gb:AK107660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g456909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45630OsAffx.22947.1.S1_x_at8/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.2.S1_x_at7/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.3.S1_x_at6/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_x_at4/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_at2/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45640NANA5+26370048..26372649retrotransposon protein, putative, unclassified
LOC_Os05g45650Os.28943.1.S1_x_at1/115+26373275..26376489retrotransposon protein, putative, unclassified
LOC_Os05g45660Os.6808.1.S1_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660OsAffx.15114.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660Os.6808.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45670OsAffx.27328.1.S1_at11/115+26384268..26385706hypothetical protein
LOC_Os05g45680OsAffx.17941.1.A1_s_at1/115+26386778..26387935retrotransposon protein, putative, unclassified
LOC_Os05g45690Os.55202.1.S1_at9/115+26388945..26390509expressed protein
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55202.1.S1_at--792--6191Chr05:26389447..26389471 (25 bp)
GAGGCTGAATTTCCTGCCATTCGAA
LOC_Os05g45690
Os.55202.1.S1_at--913--7891Chr05:26389402..26389426 (25 bp)
GGTTCTTGCATTTGGAGCCACAGAC
LOC_Os05g45690
Os.55202.1.S1_at--884--5051Chr05:26389372..26389396 (25 bp)
GCAGCATCCAAAGCTTGCATCCATG
LOC_Os05g45690
Os.55202.1.S1_at--133--1331NONE
AGAGGCTGCTTCTTGTGTGTACACA
NONE
Os.55202.1.S1_at--857--7471NONE
GTGTGTACACATCGGAGGAGCTCTA
NONE
Os.55202.1.S1_at--473--5931Chr05:26389255..26389279 (25 bp)
GAGCAGGTTTGTTGCGTTCGTCAGA
LOC_Os05g45690
Os.55202.1.S1_at--186--10491Chr05:26389214..26389238 (25 bp)
TTAACTCCCTTATGCCTTGTGATTG
LOC_Os05g45690
Os.55202.1.S1_at--1141--6411Chr05:26389185..26389209 (25 bp)
GATCATCCTAAGTTCGGTTGGGTAA
LOC_Os05g45690
Os.55202.1.S1_at--409--6651Chr05:26389071..26389095 (25 bp)
GTTGATTTGCTGTCTGGACGCGTCA
LOC_Os05g45690
Os.55202.1.S1_at--208--5591Chr05:26389015..26389039 (25 bp)
GAAATCTCGGATTCCTCCTTATTAC
LOC_Os05g45690
Os.55202.1.S1_at--160--5671Chr05:26388953..26388977 (25 bp)
GACATGTGGTTCAGGCTTTCAGTAG
LOC_Os05g45690
Target Sequence 
GAGGCTGAATTTCCTGCCATTCGAAGCCTACTGGTACTTCTTCAAGGTTCTTGCATTTGGAGCCACAGACCCAGAGCAGC
ATCCAAAGCTTGCATCCATGGCGATGGAGATCGCGACAGTGCTAAGAGGCTGCTTCTTGTGTGTACACATCGGAGGAGCT
CTACTGAAAGCCAATTTCAACTCCAAATTCTGGAGCAGGTTTGTTGCGTTCGTCAGAGAGTACAGAGACGAAATTAACTC
CCTTATGCCTTGTGATTGCCAGGATCATCCTAAGTTCGGTTGGGTAATTGTGAGACCTAAACCTGAAAATTACTTTGTAC
TGCGTGATAGCTACCAGAAGGCTCTTGTTGAAGATGATGGTCCAAAGATTAAGCTGGTTGATTTGCTGTCTGGACGCGTC
AGGCGCCGAGGGAAATTCGAGGTTTTGGTGTGGAAATCTCGGATTCCTCCTTATTACAGCTACATATCAAATTGTGTTAT
GTACTAGGTTAAATGACATGTGGTTCAGGCTTTCAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis