Browse Element(s) Details


Os.6808.1.S1_x_at

Description gb:AK067806.1
DB_XREF= gi:32977824
TID=Os.6808.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119G19, full insert sequence.
FL= gb:AK067806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4566011/11Hyaluronan/mRNA binding family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45620NANA5+26354997..26359658retrotransposon protein, putative, unclassified
LOC_Os05g45630OsAffx.22947.1.S1_x_at8/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.2.S1_x_at7/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.3.S1_x_at6/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_x_at4/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_at2/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45640NANA5+26370048..26372649retrotransposon protein, putative, unclassified
LOC_Os05g45650Os.28943.1.S1_x_at1/115+26373275..26376489retrotransposon protein, putative, unclassified
LOC_Os05g45660Os.6808.1.S1_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660OsAffx.15114.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660Os.6808.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45670OsAffx.27328.1.S1_at11/115+26384268..26385706hypothetical protein
LOC_Os05g45680OsAffx.17941.1.A1_s_at1/115+26386778..26387935retrotransposon protein, putative, unclassified
LOC_Os05g45690Os.55202.1.S1_at9/115+26388945..26390509expressed protein
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6808.1.S1_x_at--446--6811Chr05:26383025..26383133 (25 bp)
GTTTTCATCAAACTGGGATCTGACA
LOC_Os05g45660
Os.6808.1.S1_x_at--814--2591Chr05:26383529..26383553 (25 bp)
AACGAGTTCCTAAAACCAGCTGAAG
LOC_Os05g45660
Os.6808.1.S1_x_at--866--811Chr05:26383623..26383647 (25 bp)
ATGGTGAGGGCCATCGCTCTGCAGC
LOC_Os05g45660
Os.6808.1.S1_x_at--40--3151Chr05:26383680..26383704 (25 bp)
AATTCCCCACTCTTGGTCGGAAGTG
LOC_Os05g45660
Os.6808.1.S1_x_at--312--7371Chr05:26383702..26383726 (25 bp)
GTGAAATGCATGTACTGCCTGCAGT
LOC_Os05g45660
Os.6808.1.S1_x_at--263--3831Chr05:26383716..26383740 (25 bp)
CTGCCTGCAGTATCAAGTTATGTTT
LOC_Os05g45660
Os.6808.1.S1_x_at--275--6791Chr05:26383732..26383756 (25 bp)
GTTATGTTTGCGGTCAACTTTGAAT
LOC_Os05g45660
Os.6808.1.S1_x_at--149--7093Chr12:5712974..5713045 (24 bp)
GTCAACTTTGAATTTTGTCTATCCG
NONE
Os.6808.1.S1_x_at--736--7151Chr05:26383760..26383784 (25 bp)
GTCTATCCGTAAATCACTGTGCAAG
LOC_Os05g45660
Os.6808.1.S1_x_at--799--3871Chr05:26383776..26383800 (25 bp)
CTGTGCAAGTGCTGATCTGATCAAA
LOC_Os05g45660
Os.6808.1.S1_x_at--900--9191Chr05:26383940..26383963 (24 bp)
TGCCAGCTTTGGTTTCGTTTGTGAA
LOC_Os05g45660
Target Sequence 
GTTTTCATCAAACTGGGATCTGACAAGGATGCTTTGAAGAAGAAAGAAAATGCTGAACGTGATGAGCGTGCTAAGAAGTC
TGTGAGCATCAACGAGTTCCTAAAACCAGCTGAAGGAGAGAGGTACTATGGCGGCCGTGGTCGTGGCAGGGGCCGCGGGG
ATCGTGGCGGTTTCAGGGGTGGATATGGTGAGGGCCATCGCTCTGCAGCTCCACCAGCTCCAGAAATCAAAGACCAATCC
CAATTCCCCACTCTTGGTCGGAAGTGAAATGCATGTACTGCCTGCAGTATCAAGTTATGTTTGCGGTCAACTTTGAATTT
TGTCTATCCGTAAATCACTGTGCAAGTGCTGATCTGATCAAACAAATAATGGTGTCGCATTTGGTCAAGAGTCCCCGATA
TGTCAGTCGAATTTGTATATCGGAGTTGCTTGTTACGTTTCAGAATTTTGTAGGCTGTTATTGAACTCCCTTCTGTTACC
AGCAAAGCGTTTCCTANGTGCTGCCAGCTTTGGTTTCGTTTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6808.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis