Browse Element(s) Details


Os.27618.1.S1_at

Description gb:AK106477.1
DB_XREF= gi:32991686
TID=Os.27618.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-C11, full insert sequence.
FL= gb:AK106477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4575011/11ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os05g45760OsAffx.4628.1.S1_s_at11/115+26421209..26423364pentatricopeptide, putative, expressed
LOC_Os05g45770OsAffx.15117.1.S1_at10/115+26424397..26426626Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein
LOC_Os05g45790NANA5+26440552..26443857retrotransposon protein, putative, unclassified
LOC_Os05g45800Os.56089.1.S1_at1/115+26444472..26450624retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27618.1.S1_at--489--2491Chr05:26420161..26420185 (25 bp)
AACAGTTGGCTTGAATGATCTCAGT
LOC_Os05g45750
Os.27618.1.S1_at--942--1571Chr05:26420188..26420296 (25 bp)
AGCTCAATTGGTTCAGGTTCTCATG
LOC_Os05g45750
Os.27618.1.S1_at--582--5191Chr05:26420576..26420666 (25 bp)
GCAATGTTTGAGATTCCTGATGCAA
LOC_Os05g45750
Os.27618.1.S1_at--1023--8731Chr05:26420713..26420737 (25 bp)
TGTAGGGTCAGTGCATTCTCGAGGA
LOC_Os05g45750
Os.27618.1.S1_at--882--6531Chr05:26420749..26420773 (25 bp)
GATTTTCCGGGATGATGGAGCCTTA
LOC_Os05g45750
Os.27618.1.S1_at--776--10191Chr05:26420797..26420821 (25 bp)
TATTAGACTGCCAGGGTTAATCCCT
LOC_Os05g45750
Os.27618.1.S1_at--251--8171Chr05:26420823..26420847 (25 bp)
GGAACCCTAAACGTACTCGCATTGT
LOC_Os05g45750
Os.27618.1.S1_at--419--3671Chr05:26420858..26420882 (25 bp)
CTTTTGGTCGCTTTGTCAGCAACTA
LOC_Os05g45750
Os.27618.1.S1_at--1001--1431Chr05:26420875..26420899 (25 bp)
AGCAACTAAGCTGTGGGTTTACCAT
LOC_Os05g45750
Os.27618.1.S1_at--226--7691Chr05:26420889..26420913 (25 bp)
GGGTTTACCATACATTTCACTGCTT
LOC_Os05g45750
Os.27618.1.S1_at--769--5271Chr05:26420927..26420951 (25 bp)
GAATGGGTTGTGTCGATACTATGTA
LOC_Os05g45750
Target Sequence 
AACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAAT
NCAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCT
TCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGC
AAGAGNGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAG
CCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGG
AACCCTAAACGTACTCGCATTGTCAGCTTNTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATT
TCACTGCTTNTCCTCGATATACGAATGGGTTGTGTCGATACTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis