Browse Element(s) Details


OsAffx.24885.1.S1_at

Description tigr:9630.m05519
TID=OsAffx.24885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT002966 putative F-box family protein, AtFBL14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5554011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55500Os.6591.1.S1_at11/112+33977061..33977762expressed protein
LOC_Os02g55510Os.6591.1.S1_at11/112+33980599..33981803hypothetical protein
LOC_Os02g55520Os.18962.1.S1_at9/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55520Os.9329.1.S1_at6/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55530Os.24368.1.S1_at11/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55530OsAffx.27328.1.S1_at1/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55540OsAffx.24885.1.S1_at11/112+34002376..34004220F-box family protein, putative, expressed
LOC_Os02g55550Os.49445.1.S1_at11/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55550Os.45957.3.S1_x_at9/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55560Os.13743.1.S1_at11/112+34020405..34024416DNA-binding protein phosphatase 2C, putative, expressed
LOC_Os02g55570OsAffx.3080.1.S1_at11/112+34025278..34028418Shugoshin C terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24885.1.S1_at--537--91Chr02:34003902..34003926 (25 bp)
ATTCCTCTGTTGTGTCATGCTATTT
LOC_Os02g55540
OsAffx.24885.1.S1_at--713--1571Chr02:34003805..34003829 (25 bp)
AGCTCACCTTTACATTTTGTTCCGA
LOC_Os02g55540
OsAffx.24885.1.S1_at--670--10251Chr02:34003790..34003814 (25 bp)
TTTGTTCCGAGGACTATCCGTCAGA
LOC_Os02g55540
OsAffx.24885.1.S1_at--805--6791Chr02:34003745..34003769 (25 bp)
GTATTGTAAACCTCGTTCAGTCCTG
LOC_Os02g55540
OsAffx.24885.1.S1_at--399--9211Chr02:34003720..34003744 (25 bp)
TCCAATTCGTGTTCTCATGCTTAAT
LOC_Os02g55540
OsAffx.24885.1.S1_at--301--5271Chr02:34003670..34003694 (25 bp)
GAATGAAGGGCCTGTCATCCTCAAG
LOC_Os02g55540
OsAffx.24885.1.S1_at--1018--7651Chr02:34003604..34003628 (25 bp)
GGGATTTAGGCATGCGTTCCATCGC
LOC_Os02g55540
OsAffx.24885.1.S1_at--87--6131Chr02:34003520..34003544 (25 bp)
GAGTGTCTGAGCTGGTGCATGCACA
LOC_Os02g55540
OsAffx.24885.1.S1_at--95--171Chr02:34003476..34003500 (25 bp)
ATTATAGGTTGCCATCGGATCTCTC
LOC_Os02g55540
OsAffx.24885.1.S1_at--501--491Chr02:34003463..34003487 (25 bp)
ATCGGATCTCTCTGAAAGCTGTGCA
LOC_Os02g55540
OsAffx.24885.1.S1_at--13--7591Chr02:34003436..34003460 (25 bp)
GGGCTGCCAGATCAGTTTACTACTC
LOC_Os02g55540
Target Sequence 
ATTCCTCTGTTGTGTCATGCTATTTATTTTCGGACAGCATTGACCAATGACAGCCTTAAGGCCCTGGCTCTCTACTGCCC
TATGCTTCAGGTTCTTGAGCTCACCTTTACATTTTGTTCCGAGGACTATCCGTCAGAAGTAGGCTTTTCACAGGAGGGTA
TTGTAAACCTCGTTCAGTCCTGTCCAATTCGTGTTCTCATGCTTAATGGTGCCAGCAATTTTGACGACGAGGGAATGAAG
GGCCTGTCATCCTCAAGATCCCTGGAGACACTCGAGCTTGTGGATTGCATGTTTATAGGGGATTTAGGCATGCGTTCCAT
CGCGCGCACCCCGAACTTGCGGAATCTAACACTCCGGAAGTGTGTTTGTGTGACTGACAATGGAGTGTCTGAGCTGGTGC
ATGCACAGAACTTGGAATCCCTGACCATTATAGGTTGCCATCGGATCTCTCTGAAAGCTGTGCAGGGGGCTGCCAGATCA
GTTTACTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis