Browse Element(s) Details


Os.13582.1.S1_at

Description gb:AK069830.1
DB_XREF= gi:32979854
TID=Os.13582.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030M09, full insert sequence.
FL= gb:AK069830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5564010/11Proteasome maturation factor UMP1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55600Os.20333.1.S1_at11/112+34047313..34047921expressed protein
LOC_Os02g55610NANA2+34052272..34053164serine-rich protein, putative, expressed
LOC_Os02g55620OsAffx.12656.1.S1_at11/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55620OsAffx.12656.2.S1_at4/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55630Os.20829.1.S1_at11/112+34065186..34069609CobW/P47K family protein, expressed
LOC_Os02g55640Os.13582.1.S1_at10/112+34069969..34072290Proteasome maturation factor UMP1 family protein, expressed
LOC_Os02g55649Os.12270.1.S1_at11/112+34075906..34076612expressed protein
LOC_Os02g55658Os.12270.1.S1_at11/112+34078499..34079116expressed protein
LOC_Os02g55670Os.28065.1.S1_x_at10/112+34084041..34085489expressed protein
LOC_Os02g55670Os.28065.2.S1_at9/112+34084041..34085489expressed protein
LOC_Os02g55680Os.7287.1.S1_s_at10/112+34088042..34095412Cyclin, N-terminal domain containing protein
LOC_Os02g55680Os.7287.1.S1_x_at5/112+34088042..34095412Cyclin, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13582.1.S1_at--413--111Chr02:34070322..34070346 (25 bp)
ATTCTGAAAGCTTCCGTGCTCCCGA
LOC_Os02g55640
Os.13582.1.S1_at--461--4791Chr02:34070197..34070221 (25 bp)
GCTCCTCGTTCAGTATCTATATCGG
LOC_Os02g55640
Os.13582.1.S1_at--638--491Chr02:34070177..34070201 (25 bp)
ATCGGTCTTTAGACCGTGACCGTGA
LOC_Os02g55640
Os.13582.1.S1_at--266--1771Chr02:34070159..34070183 (25 bp)
ACCGTGACCGTGACATGTAAGAACT
LOC_Os02g55640
Os.13582.1.S1_at--848--5471Chr02:34070139..34070163 (25 bp)
GAACTATAGGTATTGCATCCGTTTG
LOC_Os02g55640
Os.13582.1.S1_at--551--3511Chr02:34070124..34070148 (25 bp)
CATCCGTTTGAGGAGTTCTAAAATC
LOC_Os02g55640
Os.13582.1.S1_at--737--3891Chr02:34070060..34070084 (25 bp)
CTGGTTGCTGTGGTCGAATGCACTT
LOC_Os02g55640
Os.13582.1.S1_at--87--2451Chr02:34070032..34070056 (25 bp)
AAAATGATTTGCTCCCTGCATGGAC
LOC_Os02g55640
Os.13582.1.S1_at--1036--3831Chr02:34070017..34070041 (25 bp)
CTGCATGGACATCTGGGAATCTGGC
LOC_Os02g55640
Os.13582.1.S1_at--1068--3911Chr02:34069997..34070021 (25 bp)
CTGGCCAGTTGGAGCGTGTACATAA
LOC_Os02g55640
Os.13582.1.S1_at--754--6271Chr02:34069969..34069993 (25 bp)
GATGTCTATTATGCATTGGTTCTAC
NONE
Target Sequence 
ATTCTGAAAGCTTCCGTGCTCCCGACATGCACCACGGAATGGAGGTTCGCCTCGGTTTNTCAAAGGGACCTGTTTGCCCT
AGTTTCAATTGATTTCTCAAAAATGNATTTCTTGTCTTNACACTGCGCTCCTCGTTCAGTATCTATATCGGTCTTTAGAC
CGTGACCGTGACCGTGACATGTAAGAACTATAGGTATTGCATCCGTTTGAGGAGTTCTAAAATCGAATTTAATGTTATCA
NNNNNNANNNNNNNTCCGGTTTGCTGGTTGCTGTGGTCGAATGCACTTAAGAAAATGATTTGCTCCCTGCATGGACATCT
GGGAATCTGGCCAGTTGGAGCGTGTACATAATGAGATGTCTATTATGCATTGGTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis