Browse Element(s) Details


OsAffx.11940.1.S1_at

Description tigr:9630.m00789
TID=OsAffx.11940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 01167 Tub family.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0831011/11tubby family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08260Os.47991.1.S1_at10/112+4384185..4388025metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os02g08270Os.49453.1.S1_at10/112+4390147..4393561glutamine amidotransferase class-I family protein, expressed
LOC_Os02g08280Os.47463.1.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08280Os.14491.2.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08290NANA2+4403220..4406550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08300Os.14778.1.S1_at11/112+4407955..4412769DNA repair protein RAD23, putative, expressed
LOC_Os02g08310OsAffx.11940.1.S1_at11/112+4412799..4415057tubby family protein, putative, expressed
LOC_Os02g08320Os.16797.1.S1_at11/112+4423143..4424222Haemolysin-III related family protein, expressed
LOC_Os02g08330Os.56789.1.S1_at11/112+4424446..4426617expressed protein
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11940.1.S1_at--35--5611Chr02:4414244..4414268 (25 bp)
GACAAGAACTTCCTCGGCACATTGA
LOC_Os02g08310
OsAffx.11940.1.S1_at--676--2071Chr02:4414226..4414250 (25 bp)
ACATTGAGCTCAAACCTCGTCGGAT
LOC_Os02g08310
OsAffx.11940.1.S1_at--686--6771Chr02:4413849..4413873 (25 bp)
GTTACTACGCTTACAGGGAGCTTCA
LOC_Os02g08310
OsAffx.11940.1.S1_at--877--2711Chr02:4413823..4413847 (25 bp)
AAGCATGAGGGCTTGGATTCCCAAG
LOC_Os02g08310
OsAffx.11940.1.S1_at--1068--5491Chr02:4413778..4413802 (25 bp)
GAACAGCAATTCAGCTCAGGCAAGT
LOC_Os02g08310
OsAffx.11940.1.S1_at--55--6571Chr02:4413666..4413690 (25 bp)
GATTCAGCACATCAGTGGGCTTCCA
LOC_Os02g08310
OsAffx.11940.1.S1_at--262--2951Chr02:4413617..4413641 (25 bp)
AAGGCTGATCAGCTCTGCTCAAGAT
LOC_Os02g08310
OsAffx.11940.1.S1_at--353--9091Chr02:4413602..4413626 (25 bp)
TGCTCAAGATCTCCTTTCTACAACA
LOC_Os02g08310
OsAffx.11940.1.S1_at--464--6471Chr02:4413409..4413433 (25 bp)
GATACAAGGTGCAGCCATCGGTGAA
LOC_Os02g08310
OsAffx.11940.1.S1_at--1110--8511Chr02:4413077..4413210 (25 bp)
TGGACTTCAGGTACCCATTGACTGG
LOC_Os02g08310
OsAffx.11940.1.S1_at--763--5731Chr02:4413058..4413082 (25 bp)
GACTGGCTACCAGGCATTGTGCATT
LOC_Os02g08310
Target Sequence 
GACAAGAACTTCCTCGGCACATTGAGCTCAAACCTCGTCGGATCCAGATACCGAATCTGGGGCCAGGGGAACAGGGTGGA
TGAGATCAAGAGCCAGTCGAAGCGGCTCCTCGGCGTCGTCGCGTTTGCGCCTACTGTTACTACGCTTACAGGGAGCTTCA
GAAGCATGAGGGCTTGGATTCCCAAGAACCAATCCATTCATCTGAAGAACAGCAATTCAGCTCAGGCAAGTGAATTTCCT
GTTGTGGAGATTCAGCACATCAGTGGGCTTCCAAAGGATTGGCAAGAGAAGAAGATCAAGGCTGATCAGCTCTGCTCAAG
ATCTCCTTTCTACAACAATATGACAAAACGGTATGAACTGGACTTCAGAGAGAGGGCAGGGAGGATGGGATACAAGGTGC
AGCCATCGGTGAAGAACTTCCAGATGACTTTGGAGGAGAAAGGAAGGCAGACAATATTGCAGCTTGGTAGGATTGGCAAA
TCCAAGTACATTATGGACTTCAGGTACCCATTGACTGGCTACCAGGCATTGTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis