Browse Element(s) Details


Os.49453.1.S1_at

Description gb:AK111348.1
DB_XREF= gi:32996557
TID=Os.49453.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G04, full insert sequence.
FL= gb:AK111348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0827010/11glutamine amidotransferase class-I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08240OsAffx.11939.1.S1_at5/112+4376785..4380320Protein kinase domain containing protein, expressed
LOC_Os02g08250OsAffx.11939.1.S1_at6/112+4380623..4381918hypothetical protein
LOC_Os02g08250OsAffx.25665.1.S1_at1/112+4380623..4381918hypothetical protein
LOC_Os02g08260Os.47991.1.S1_at10/112+4384185..4388025metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os02g08270Os.49453.1.S1_at10/112+4390147..4393561glutamine amidotransferase class-I family protein, expressed
LOC_Os02g08280Os.47463.1.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08280Os.14491.2.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08290NANA2+4403220..4406550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08300Os.14778.1.S1_at11/112+4407955..4412769DNA repair protein RAD23, putative, expressed
LOC_Os02g08310OsAffx.11940.1.S1_at11/112+4412799..4415057tubby family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49453.1.S1_at--847--7071Chr02:4391581..4391601 (21 bp)
GTCAATAACAACACCATCACGAGTG
LOC_Os02g08270
Os.49453.1.S1_at--676--2151NONE
ACACCATCACGAGTGGCATAGGCGA
NONE
Os.49453.1.S1_at--568--6931Chr02:4390648..4390672 (25 bp)
GTAGAGGCCAGTGAGCCAGACCGTC
LOC_Os02g08270
Os.49453.1.S1_at--102--891Chr02:4390644..4390668 (25 bp)
AGGCCAGTGAGCCAGACCGTCGATT
LOC_Os02g08270
Os.49453.1.S1_at--885--7371Chr02:4390638..4390662 (25 bp)
GTGAGCCAGACCGTCGATTCTGGAC
LOC_Os02g08270
Os.49453.1.S1_at--417--10791Chr02:4390609..4390633 (25 bp)
TTGTGCAAGGGCTTCCTTAAGAGAC
LOC_Os02g08270
Os.49453.1.S1_at--758--4891Chr02:4390600..4390624 (25 bp)
GGCTTCCTTAAGAGACCGACCGCCG
LOC_Os02g08270
Os.49453.1.S1_at--951--4231Chr02:4390569..4390593 (25 bp)
CCGTTGACATGCCTCCACGGGAGGT
LOC_Os02g08270
Os.49453.1.S1_at--144--10251Chr02:4390498..4390522 (25 bp)
TTTGTCGCAACTACTCCGATCGGCT
LOC_Os02g08270
Os.49453.1.S1_at--820--2531Chr02:4390490..4390514 (25 bp)
AACTACTCCGATCGGCTTGTAGCTA
LOC_Os02g08270
Os.49453.1.S1_at--273--9291Chr02:4390484..4390508 (25 bp)
TCCGATCGGCTTGTAGCTAGCTGCA
LOC_Os02g08270
Target Sequence 
GTCAATAACAACACCATCACGAGTGGCATAGGCGAGGAGGCGCGGCGGACGGTAGAGGCCAGTGAGCCAGACCGTCGATT
CTGGACGGGGTTGTGCAAGGGCTTCCTTAAGAGACCGACCGCCGCCACCACCGTTGACATGCCTCCACGGGAGGTGGCGC
CGNAGATGATGAGCTGCAGCCATATCATCGCNGNNGGCCANTTTGTCGCAACTACTCCGATCGGCTTGTAGCTAGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis