Browse Element(s) Details


OsAffx.25665.1.S1_at

Description tigr:9631.m04956
TID=OsAffx.25665.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5073011/11Eukaryotic membrane protein family protein, expressed
LOC_Os02g082501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50670Os.48948.1.S1_x_at9/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670Os.48948.1.S1_at7/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670OsAffx.26155.1.S1_x_at7/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670OsAffx.22848.3.S1_x_at1/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50690NANA3+28892740..28893924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g50710NANA3+28903514..28904069hypothetical protein
LOC_Os03g50720OsAffx.25664.1.S1_at5/113+28906568..28907690hypothetical protein
LOC_Os03g50730Os.49136.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.39929.1.A1_s_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730OsAffx.25665.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.49372.1.S1_at1/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50740Os.26446.1.S1_a_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.1.S1_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.2.S1_at10/113+28913493..28924448expressed protein
LOC_Os03g50760NANA3+28926417..28929209EF hand family protein
LOC_Os03g50780OsAffx.25668.1.S1_at11/113+28937553..28941017PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25665.1.S1_at--591--10671Chr03:28913022..28913046 (25 bp)
TTCCTGCTGGCCCATTTATCTGGAG
LOC_Os03g50730
OsAffx.25665.1.S1_at--805--3831Chr03:28913025..28913049 (25 bp)
CTGCTGGCCCATTTATCTGGAGAGT
LOC_Os03g50730
OsAffx.25665.1.S1_at--499--4711Chr03:28913027..28913051 (25 bp)
GCTGGCCCATTTATCTGGAGAGTAT
LOC_Os03g50730
OsAffx.25665.1.S1_at--462--3911Chr03:28913041..28913065 (25 bp)
CTGGAGAGTATTTTGGATCCTGCTT
LOC_Os03g50730
OsAffx.25665.1.S1_at--167--6071Chr03:28913046..28913070 (25 bp)
GAGTATTTTGGATCCTGCTTTGGTC
LOC_Os03g50730
OsAffx.25665.1.S1_at--1012--6871Chr03:28913048..28913072 (25 bp)
GTATTTTGGATCCTGCTTTGGTCAG
LOC_Os03g50730
OsAffx.25665.1.S1_at--1018--9511Chr03:28913469..28913493 (25 bp)
TCTCAACCTAGAGAAGATGTTTGCA
LOC_Os03g50730
OsAffx.25665.1.S1_at--155--2371Chr03:28913493..28913517 (25 bp)
AAAGCCTGCTCTTCTGTCCACAAGA
LOC_Os03g50730
OsAffx.25665.1.S1_at--776--9091Chr03:28913499..28913523 (25 bp)
TGCTCTTCTGTCCACAAGACATGTT
LOC_Os03g50730
OsAffx.25665.1.S1_at--494--3651Chr03:28913503..28913527 (25 bp)
CTTCTGTCCACAAGACATGTTTGTA
LOC_Os03g50730
OsAffx.25665.1.S1_at--594--3292Chr03:28913511..28913535 (25 bp)
CACAAGACATGTTTGTACATTTCCT
LOC_Os03g50730
Target Sequence 
TTCCTGCTGGCCCATTTATCTGGAGAGTATTTTGGATCCTGCTTTGGTCAGTCCTGACCTACTTCATGCTCGCCGTATTC
AAGATACTAGTGGGATTGGTATTGCGCTGCCTTGCAACTTGGTATGTAAATCTTCGTCTCAAAAACAAACAACATGTGGA
CTGAGCATTTTGCACTTGGCACCAAAGTTTGGTGTGAAAGATAACATCCCCGGGAAGACAGACATTTGCTGTGGTTCGTG
AAGTACAGCAACCGCTGCAGCTGCTGCTTGAGTTCAGATATACATATATGCCCATATGGCAAAATTCTTGATGATAGTAT
AGTACAGCTTAGAGGTTCTCTGATCCTGAGGAACTGGGTAAAGTCCAATTTTGCGGTGTTCACGGTTTATTTTATTTCTA
GTACCTATTGTTCATATAGCTCATAGCTTCATCATATATAAGTATATTCTCAACCTAGAGAAGATGTTTGCAAAGCCTGC
TCTTCTGTCCACAAGACATGTTTGTACATTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis