Browse Element(s) Details


OsAffx.25664.1.S1_at

Description tigr:9631.m04955
TID=OsAffx.25664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g507205/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50670Os.48948.1.S1_x_at9/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670Os.48948.1.S1_at7/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670OsAffx.26155.1.S1_x_at7/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670OsAffx.22848.3.S1_x_at1/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50690NANA3+28892740..28893924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g50710NANA3+28903514..28904069hypothetical protein
LOC_Os03g50720OsAffx.25664.1.S1_at5/113+28906568..28907690hypothetical protein
LOC_Os03g50730Os.49136.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.39929.1.A1_s_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730OsAffx.25665.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.49372.1.S1_at1/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50740Os.26446.1.S1_a_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.1.S1_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.2.S1_at10/113+28913493..28924448expressed protein
LOC_Os03g50760NANA3+28926417..28929209EF hand family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25664.1.S1_at--168--4751Chr03:28906600..28906624 (25 bp)
GCTGATTCTCGCCTTGGTCGCCACA
LOC_Os03g50720
OsAffx.25664.1.S1_at--360--8831Chr03:28906602..28906626 (25 bp)
TGATTCTCGCCTTGGTCGCCACAGC
LOC_Os03g50720
OsAffx.25664.1.S1_at--507--10851Chr03:28906613..28906637 (25 bp)
TTGGTCGCCACAGCCGCGCACGCGG
LOC_Os03g50720
OsAffx.25664.1.S1_at--86--8351Chr03:28906658..28906682 (25 bp)
GGCGCGAACGGTGATGCCGTGACGC
LOC_Os03g50720
OsAffx.25664.1.S1_at--1042--3831Chr03:28906717..28906738 (22 bp)
CTGCACGCATGATGGCAACACGACG
LOC_Os03g50720
OsAffx.25664.1.S1_at--803--3351NONE
CACGCATGATGGCAACACGACGCTT
NONE
OsAffx.25664.1.S1_at--988--1831NONE
ACGCATGATGGCAACACGACGCTTA
NONE
OsAffx.25664.1.S1_at--170--4991NONE
GCATGATGGCAACACGACGCTTACT
NONE
OsAffx.25664.1.S1_at--286--711NONE
ATGATGGCAACACGACGCTTACTCC
NONE
OsAffx.25664.1.S1_at--328--851NONE
ATGGCAACACGACGCTTACTCCTAA
NONE
OsAffx.25664.1.S1_at--388--5151NONE
GCAACACGACGCTTACTCCTAATAA
NONE
Target Sequence 
GCTGATTCTCGCCTTGGTCGCCACAGCCGCGCACGCGGCGAGGGCGGCGCCGGGCACCGGCGCGAACGGTGATGCCGTGA
CGCGCGCGGCGAGGTCGCTGCTGTCGAGGGCGTCGTGCTGCACGCATGATGGCAACACGACGCTTACTCCTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis