Browse Element(s) Details


Os.39929.1.A1_s_at

Description gb:CB648937
DB_XREF= gi:29643930
DB_XREF=OSJNEb12J11.r
CLONE=OSJNEb12J11
TID=Os.39929.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39929 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176963.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5073011/11Eukaryotic membrane protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50670Os.48948.1.S1_x_at9/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670Os.48948.1.S1_at7/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670OsAffx.26155.1.S1_x_at7/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670OsAffx.22848.3.S1_x_at1/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50690NANA3+28892740..28893924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g50710NANA3+28903514..28904069hypothetical protein
LOC_Os03g50720OsAffx.25664.1.S1_at5/113+28906568..28907690hypothetical protein
LOC_Os03g50730Os.49136.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.39929.1.A1_s_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730OsAffx.25665.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.49372.1.S1_at1/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50740Os.26446.1.S1_a_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.1.S1_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.2.S1_at10/113+28913493..28924448expressed protein
LOC_Os03g50760NANA3+28926417..28929209EF hand family protein
LOC_Os03g50780OsAffx.25668.1.S1_at11/113+28937553..28941017PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39929.1.A1_s_at--974--7471Chr03:28912984..28913004 (21 bp)
GTGTGGTGATTCGTGTATTGACTCC
LOC_Os03g50730
Os.39929.1.A1_s_at--138--6871Chr03:28912994..28913018 (25 bp)
GTATTGACTCCAGTATATGCCACCC
LOC_Os03g50730
Os.39929.1.A1_s_at--165--2511Chr03:28913137..28913161 (25 bp)
AACTTGGTATGTAAATCTTCGTCTC
LOC_Os03g50730
Os.39929.1.A1_s_at--411--5931Chr03:28913184..28913208 (25 bp)
GAGCATTTTGCACTTGGCACCAAAG
LOC_Os03g50730
Os.39929.1.A1_s_at--835--7431Chr03:28913213..28913237 (25 bp)
GTGTGAAAGATAACATCCCCGGGAA
LOC_Os03g50730
Os.39929.1.A1_s_at--453--551Chr03:28913227..28913251 (25 bp)
ATCCCCGGGAAGACAGACATTTGCT
LOC_Os03g50730
Os.39929.1.A1_s_at--876--5671Chr03:28913242..28913266 (25 bp)
GACATTTGCTGTGGTTCGTGAAGTA
LOC_Os03g50730
Os.39929.1.A1_s_at--672--6711Chr03:28913255..28913279 (25 bp)
GTTCGTGAAGTACAGCAACCGCTGC
LOC_Os03g50730
Os.39929.1.A1_s_at--418--5051Chr03:28913278..28913302 (25 bp)
GCAGCTGCTGCTTGAGTTCAGATAT
LOC_Os03g50730
Os.39929.1.A1_s_at--117--10451Chr03:28913350..28913374 (25 bp)
TTAGAGGTTCTCTGATCCTGAGGAA
LOC_Os03g50730
Os.39929.1.A1_s_at--724--2591Chr03:28913382..28913406 (25 bp)
AAGTCCAATTTTGCGGTGTTCACGG
LOC_Os03g50730
Target Sequence 
GTGTGGTGATTCGTGTATTGACTCCAGTATATGCCACCCNNCTTCNTGNTNGCCCANTNATNTGGAGAGTATTNTGGANT
CCTGCTTTGGTCAGTCCTGACNTACTTCATGCTCGCNGTATTCAAGATACTAGTGGGANTGGTATTGCGCTNCCTTGCAA
CTTGGTATGTAAATCTTCGTCTCAAAAACNAACAACATGTGGACTGAGCATTTTGCACTTGGCACCAAAGTTTGGTGTGA
AAGATAACATCCCCGGGAAGACAGACATTTGCTGTGGTTCGTGAAGTACAGCAACCGCTGCAGCTGCTGCTTGAGTTCAG
ATATACATATATGCCCATATGGCAAAATTCTTGATGATAGTATAGTACAGCTTAGAGGTTCTCTGATCCTGAGGAACTGG
GTAAAGTCCAATTTTGCGGTGTTCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39929.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis