Browse Element(s) Details


OsAffx.25668.1.S1_at

Description tigr:9631.m04962
TID=OsAffx.25668.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative collagen
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5078011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50730Os.49136.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.39929.1.A1_s_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730OsAffx.25665.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.49372.1.S1_at1/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50740Os.26446.1.S1_a_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.1.S1_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.2.S1_at10/113+28913493..28924448expressed protein
LOC_Os03g50760NANA3+28926417..28929209EF hand family protein
LOC_Os03g50780OsAffx.25668.1.S1_at11/113+28937553..28941017PHD-finger family protein, expressed
LOC_Os03g50790OsAffx.25669.1.S1_at11/113+28945569..28948142hypothetical protein
LOC_Os03g50800OsAffx.3568.1.S1_at11/113+28957190..28957596hypothetical protein
LOC_Os03g50810Os.4149.2.S1_x_at10/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50810Os.4149.1.S1_at2/113+28965228..28969208Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007140biological_processmale meiosis
GO:0009556biological_processmicrosporogenesis
GO:0009846biological_processpollen germination
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25668.1.S1_at--336--6791Chr03:28938480..28938504 (25 bp)
GTTTTTCGTTGAGTGGCAACCCCAG
LOC_Os03g50780
OsAffx.25668.1.S1_at--815--1591Chr03:28938447..28938471 (25 bp)
AGCTGCTGAGCTTATACGGCCAATG
LOC_Os03g50780
OsAffx.25668.1.S1_at--911--31Chr03:28938410..28938434 (25 bp)
ATTGTGGTGGTACCACTCCATGCAT
LOC_Os03g50780
OsAffx.25668.1.S1_at--959--5911Chr03:28938377..28938401 (25 bp)
GAGCTTCTTGTCGAGTCAGAGCATG
LOC_Os03g50780
OsAffx.25668.1.S1_at--1151--1351Chr03:28938360..28938384 (25 bp)
AGAGCATGCGCTGCGGGACACTTAC
LOC_Os03g50780
OsAffx.25668.1.S1_at--907--7611Chr03:28938346..28938370 (25 bp)
GGGACACTTACTACTTCTTTGAGGA
LOC_Os03g50780
OsAffx.25668.1.S1_at--913--6331Chr03:28938113..28938137 (25 bp)
GATGCTTGCGATGTATGGCACCACA
LOC_Os03g50780
OsAffx.25668.1.S1_at--1014--1671Chr03:28938061..28938085 (25 bp)
AGCCTGTGCCACCATTATTTCTTTG
LOC_Os03g50780
OsAffx.25668.1.S1_at--1138--4671Chr03:28938011..28938035 (25 bp)
GCGGCTGGACCGATCAATTCTTGAA
LOC_Os03g50780
OsAffx.25668.1.S1_at--1037--5351Chr03:28937989..28938013 (25 bp)
GAAGAGGCACTAACGCTACCTGAAA
LOC_Os03g50780
OsAffx.25668.1.S1_at--243--1111Chr03:28937960..28937984 (25 bp)
AGTGACTATTCTATTCTTTTCCCCT
LOC_Os03g50780
Target Sequence 
GTTTTTCGTTGAGTGGCAACCCCAGCCATGGGAAGCTGCTGAGCTTATACGGCCAATGCCACTGGGGGAGATTGTGGTGG
TACCACTCCATGCATCCATGGGTGAGCTTCTTGTCGAGTCAGAGCATGCGCTGCGGGACACTTACTACTTCTTTGAGGAA
TTCCAGGCTGAAGGGCTGCATGGCATTGCTGGGGAGAAATGGGATCCAGTGATGCTTGGTGGGGCAGAGAATGGTGACAC
AATCAGCGTGTATGGCAATGGGGCAGACATGGAAACTGAGCTGCGGTGCCATGGTGGACTTGACTTGTGGGAGGTGCGGT
GCGTGTGTGGTGCGCAGGATGATGATGGTGAGCGCATGATAGCATGCGATGCTTGCGATGTATGGCACCACACACGTTGC
GTGGGCATTGCAGACAGCGAGCCTGTGCCACCATTATTTCTTTGTGTGCTCTGCGGTGGTGCGCTCATGGCGGCTGGACC
GATCAATTCTTGAAGAGGCACTAACGCTACCTGAAAGCCAAGTGACTATTCTATTCTTTTCCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis